Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 307 a.a., High-affinity branched-chain amino acid transport system permease protein LivH from Pseudomonas sp. RS175

 Score =  302 bits (774), Expect = 6e-87
 Identities = 158/304 (51%), Positives = 218/304 (71%), Gaps = 8/304 (2%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +F QQL+NGLT+GS Y LIAIGYTMVYGIIGMINFAHG+++M+G + A I   +A     
Sbjct: 6   HFFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIA--LAGLAMM 63

Query: 63  GIP-VALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQV 121
           GI  + LL+    + ++++T  + + IERVAYRPLR S RL PLI+AIGMSI L N + +
Sbjct: 64  GIDSLPLLMTAAFVASIIVTSAYGYSIERVAYRPLRSSNRLIPLISAIGMSIFLQNTVLL 123

Query: 122 TQGPRNKPIPSMVTESYHFGA-----ITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176
           +Q  ++K IP+++  S+ FG      + VS  Q+++ VVT V +      ++++ LGRA 
Sbjct: 124 SQDSKDKSIPNLIPGSFSFGPGGAEEVLVSYMQILVFVVTLVAMLGLTLFISRSRLGRAC 183

Query: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236
           RA  +D KMA LLG++ +  I++TF++GAALAAVA  +  M YGV + + GF+ G+KAFT
Sbjct: 184 RACAEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFT 243

Query: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPE 296
           AAVLGGIGS+PGA+LGGL++G+ E+  +  F   YKDV AFG+L  VL+F+PTGILGRPE
Sbjct: 244 AAVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPE 303

Query: 297 VEKV 300
           VEKV
Sbjct: 304 VEKV 307