Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 308 a.a., high-affinity branched-chain amino acid ABC transporter permease LivH from Pectobacterium carotovorum WPP14

 Score =  306 bits (783), Expect = 5e-88
 Identities = 161/304 (52%), Positives = 214/304 (70%), Gaps = 8/304 (2%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           YF QQ+ NGLTLGS Y LIAIGYTMVYGIIGMINFAHG+++M+G + + IV  IA     
Sbjct: 7   YFFQQMFNGLTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFIV--IAALMMM 64

Query: 63  GIPVALLLL-LMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQV 121
           GI    LL+ +  I A++++  + W IERVAYRP+R S RL  LI+AIGMSI L N++ +
Sbjct: 65  GIDAGWLLIGVAFIAAVVISSAYGWSIERVAYRPVRTSKRLIALISAIGMSIFLQNYVSL 124

Query: 122 TQGPRNKPIPSMVTESYHFG-----AITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176
            QG R+  +PS+VT  +  G     A T+S  QL I +VT + + A    +  + +GRA 
Sbjct: 125 NQGSRDVALPSLVTGQWVLGESNGFAATISTMQLTIWIVTFLAMLALTLFIRYSRMGRAC 184

Query: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236
           RA  +D KMA+LLG+  D+ IS+TF++GA +AAVAG +   +YGV +   GF+ G+KAFT
Sbjct: 185 RACAEDLKMASLLGISTDRVISLTFVIGALMAAVAGVLLGQFYGVINPYIGFMAGMKAFT 244

Query: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPE 296
           AAVLGGIGS+PGA++GGL++G+ E+L SAY S  YKD  +F +L  VL+  PTGILGRPE
Sbjct: 245 AAVLGGIGSIPGAMIGGLILGVAEALTSAYLSTEYKDAVSFALLIVVLLVMPTGILGRPE 304

Query: 297 VEKV 300
           VEKV
Sbjct: 305 VEKV 308