Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 297 a.a., branched-chain amino acid ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  140 bits (353), Expect = 4e-38
 Identities = 89/304 (29%), Positives = 165/304 (54%), Gaps = 21/304 (6%)

Query: 5   IQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAA-LIVFLIATSFFAG 63
           +Q L+NGL +G++YG++A+ + ++Y    ++NFA G+  ++G +    +V  +A  F+  
Sbjct: 7   LQLLVNGLIVGTLYGVVAMCFVLIYKSTQVVNFAQGEFLLIGAWTCWWLVTSMALPFYVA 66

Query: 64  IPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQVTQ 123
            P+  L +++  +A+ M          +  RPL G   ++ ++  IG+SI     ++   
Sbjct: 67  FPMTFLFMMVFGIALQM----------IVLRPLIGEPVISVIMVTIGLSIFFQAVMKSIF 116

Query: 124 GPRNKPIPSMV-TESYHFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRATEQD 182
           G   +P P +   +S     ++V    L+ +VV+ V++  F +    + +G A RAT  +
Sbjct: 117 GVWAQPFPEIFPVKSVDILGLSVQPAYLMSLVVSIVIMGLFAWFFKYSRMGLAMRATAFN 176

Query: 183 RKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAAVLGG 242
           +++A  LG+ V    +  + + A ++A+AG +  M  GV+S    F  G+K F A ++GG
Sbjct: 177 QQVAQSLGISVKAVFATAWAISAMVSALAGVVVGMVNGVSSALSFF--GIKVFPAVIVGG 234

Query: 243 IGSLPGAVLGGLLIGLIESLWSAYFSIAY------KDVAAFGILAFVLIFKPTGILGRPE 296
           + S+ GAVLGGL+IG++E+L + Y    Y        VA F +L  +L+ KP G+ G   
Sbjct: 235 LDSIIGAVLGGLIIGVLENL-AEYADGQYLHLGNLYTVAPFYVLVIILMIKPYGLFGTKT 293

Query: 297 VEKV 300
           +E+V
Sbjct: 294 IERV 297