Pairwise Alignments

Query, 296 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 256 a.a., Lipopolysaccharide export system ATP-binding protein LptB from Xanthobacter sp. DMC5

 Score =  196 bits (499), Expect = 4e-55
 Identities = 114/259 (44%), Positives = 158/259 (61%), Gaps = 9/259 (3%)

Query: 22  LKVEHLSMKFGGLMAINDFSFEAKRGEITALIGPNGAGKTTVFNCITGFYKPTMGMITMR 81
           L++  ++ +F G++A++  S  A  G++TALIGPNG+GKTT  N ITG Y    G I + 
Sbjct: 6   LELWQVAKRFQGVVAVDSVSLTAAAGKVTALIGPNGSGKTTTMNMITGLYPTDAGHIRLD 65

Query: 82  QQNGEAHLLERLPDFEITKKAKVARTFQNIRLFSGLTVLENLLVAQHNALMKASGYTILG 141
             +     + RL    +T    VARTFQNIRL +  T L N+L+  H      S   +  
Sbjct: 66  GVD-----IARLTPHRVTALG-VARTFQNIRLLATETTLTNVLLGAHR---HQSASLLDV 116

Query: 142 LLGLPAYKRAVASSIEKAKYWLEKADLVDRADDPAGDLPYGAQRRLEIARAMCTGPELLC 201
           LLGLPA KR+ A    + +  L+   +    D   G L YG +RR+EIARA+ T P LL 
Sbjct: 117 LLGLPAVKRSEARETARCEALLDLVGITHLRDVAVGGLSYGDRRRVEIARALATQPRLLL 176

Query: 202 LDEPAAGLNPKESLALNTLLRSIRDEGTSLLLIEHDMSVVMQISDHVVVLEYGQKISDGS 261
           LDEPAAG+N  E  AL  L+ +IRD G ++LLIEHD+  V ++SDH+VVL +G++I+ G+
Sbjct: 177 LDEPAAGMNFAEKRALADLVLAIRDMGITVLLIEHDIEFVARVSDHIVVLNFGREIAAGT 236

Query: 262 PDHVKNDPKVIAAYLGVED 280
           P+ V+  P VI AYLG ED
Sbjct: 237 PEEVRRMPSVIEAYLGTED 255