Pairwise Alignments

Query, 537 a.a., ABC transporter, membrane spanning protein (urea/amide) from Agrobacterium fabrum C58

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  127 bits (319), Expect = 6e-34
 Identities = 91/295 (30%), Positives = 156/295 (52%), Gaps = 12/295 (4%)

Query: 241 YAQNVWYGLSLGSVLLLAAIGLAITFGVMGIINMAHGEMVMIGAYSTFMVQEVIRSHFPG 300
           + Q +  GL+LGSV  L AIG  + +G++G+IN AHGE+ MI AY    +   + ++F G
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLA-AISLALLAYF-G 62

Query: 301 LFDWSLAIALPVAF--LVTGFVGLVMERGVIRFLYGRP-LETLLATWGISLMLQQGVRSI 357
           +  + L I   + F  +VTG  G V+ER   + L     L  L++  GISL+LQ   +  
Sbjct: 63  IESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIA 122

Query: 358 FGPTNREVGSPGWMSGSFSV----GYLNFTWNRVWIVCFSLSVFFALLVLLKRSAFGLQM 413
            G   ++ G P  ++G++ V    G++  T+ +V+I+  + +    L  ++K +  G   
Sbjct: 123 QGA--KQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRMC 180

Query: 414 RAVTQNRRMASSMGIRTPWVDAFTFALGSGVAGLAGVALS-QIDNVSPNLGQSYIIDSFM 472
           RA  Q+R+MAS +GI T  V ++ F +G+ +A LAGV ++          G    I +F 
Sbjct: 181 RATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAFT 240

Query: 473 VVVFGGVGNLWGTLVGALSLGVLNKFLEPTVGAVLGKILVLVLIILFIQKRPRGL 527
             V GG+G+L G ++G + LG+        + +    +    L+++ +  RP+GL
Sbjct: 241 AAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGL 295