Pairwise Alignments

Query, 1106 a.a., Acr family transporter from Agrobacterium fabrum C58

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  400 bits (1029), Expect = e-115
 Identities = 305/1059 (28%), Positives = 511/1059 (48%), Gaps = 47/1059 (4%)

Query: 1    MNFSAWSIRNPIAPLLGFALLMILGMQAFNTLPITRFPNIDVPVVAVTVTQSGASPSELE 60
            MN S   IR P+A +L    +M+LG  +F  LP+   P +D PV+ V+   SGASP  + 
Sbjct: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60

Query: 61   MQVTKEIEDAVAAISGVDEIQSTVVDGQSTTTVVFRIEKPTEEAVQDTKDAIDKIRSDLP 120
              V   +E  + +I+GV  + S+   G +   + F + +  + A ++ + AI+  R+ LP
Sbjct: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120

Query: 121  ADIE-VPVVSKIDVEGQAIQTFAVSSPNMTLEELSWFVDDTIKRSLQGQSGIGKVDRYGG 179
            + +  +P   KI+     I   +++S  +   +L    D  + +SL   SG+G+V   G 
Sbjct: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180

Query: 180  ADREVRVSLSPEKLDAYGITATEVNSQLRGTNVDLGSGRGQVGGNEQTIRTLGDTRDVSQ 239
            +   VR+++ P+ L+ Y ++  EV + +   N     G  +       +R          
Sbjct: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240

Query: 240  LANTTIALSNGRFVKLSELGTVTDTYQEQKSFSRFNGNPAVTFAVFRSKGASEVSVAETV 299
                 I   NG  ++LS++ TVTD  + + +   FN   AV   V R  GA+ +   + +
Sbjct: 241  YEPVVIRQQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQI 300

Query: 300  AASLDQVRKNNP-DVSIQMVDDAVYFTYGNYKAALDTLIEGAILAVIVVLLFLRNWRATL 358
             A L  ++   P  V + +  D         K A  TL+   +L ++VV LFL + RA+L
Sbjct: 301  KAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASL 360

Query: 359  IAAVALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENIARHIKMGKTP 418
            I ++A+P+S + TF +M + GFSLN +S +AL LATG++VDDAIV +ENI+RHI+ G+ P
Sbjct: 361  IPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPP 420

Query: 419  YRAALEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLAVARL 478
             +AA   A E+G  +++ + +++AVFV + FM GI    F +F +T+A ++  SL V+  
Sbjct: 421  MKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLT 480

Query: 479  ITPLMAAYLMRAEDAMDDHHDNDGRLMK----AYTRMVTATTRK--WWARY--LTLVGAI 530
            +TP++ A  ++ + A         RL +     + RMV A      W  R+  LTL+  +
Sbjct: 481  LTPMLCARWLKPQQA------EQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLL 534

Query: 531  AFLVASVMLLAQVPGSFLPPDDASRVTLSVELPPNATLDETDRTTTQIYHALRDINGVES 590
            A +  ++ L   VP + +P  D  ++   +      +             AL     V+S
Sbjct: 535  ATIGINIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQS 594

Query: 591  VF-ILGGASPKGDLELRRATVNVLLQHIDHSLLKLVVNKGLGSIPLIGQYLPKVEEKGRT 649
            V   +GG S   +     A V V L+ I  S  K+   K    I  + + LPKV   GR 
Sbjct: 595  VAGFIGGNSGTNN-----AFVLVRLKPI--SERKIDAQK---VIERLRKELPKV-PGGRL 643

Query: 650  RPQWDVERDIFAQVRGIPDVRIIKLNDRAERELSFNFLSKNEKDLSDAVGILESRLRASP 709
                D +  +    R           D+   +  +   S +   L +    + + LRA P
Sbjct: 644  FLMADQDLQLGGGGR-----------DQTSSQYLYTLQSGDLAALREWFPKVVAALRALP 692

Query: 710  ILANVSSEGALPRPELQIRPRKDEIARLGITPQQISQTVRVATIGDIDAQLTKISLDDRQ 769
             L  + +       ++ +   +D+  RLGI    ++  +  A       Q++ I     Q
Sbjct: 693  ELTAIDARDGAGTQQVTLVVDRDQAKRLGIDMDMVTAVLNNAY---SQRQISTIYDSLNQ 749

Query: 770  IPIRVQASLDTRRDLATIRALKIKTASGSLVPLYSVADIDYSEGPSSIKRNDRNRVVSIG 829
              + ++ +     D +T+  +++ TA G+ VPL ++A  + S     +    +     I 
Sbjct: 750  YQVVLEINPKYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIA 809

Query: 830  SDVPFGTALDTSTAEFKRIVAETKLPASVRLAESGDAKVQGEMQQGFVNAMLLGLMLVLV 889
             DV  G + D + A  +R VA+  LP  V     G A    + QQG    +L  L+LV +
Sbjct: 810  FDVAEGYSPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYL 869

Query: 890  VLILLFKDVIQPFTILFSLPLAIGGVAVALIITQNALSMPVLIGILMLMGIVTKNAILLV 949
            VL +L++  I P TIL +LP A  G  +AL +T    S+  L+G+ +L+G+V KNAIL++
Sbjct: 870  VLGILYESYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMI 929

Query: 950  DFAIEMRRH-GMERVHAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIA 1008
            D A+++ RH G     ++  A   R RPI+MT++A   G LP  L   EG   R P+ + 
Sbjct: 930  DLALQLERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLT 989

Query: 1009 VIGGIIVSTVLSLIVVPAFFLIMDDVSRLLAHLFGRFVG 1047
            +IGG++ S +L+L   P  +L +D     L H F R+ G
Sbjct: 990  IIGGLVFSQILTLYTTPVVYLYLD----RLRHRFNRWRG 1024