Pairwise Alignments

Query, 397 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  100 bits (249), Expect = 7e-26
 Identities = 94/352 (26%), Positives = 151/352 (42%), Gaps = 47/352 (13%)

Query: 35  KQQNLPSIIVAHA-AKRDLVDRIIATGTIRPVDEIYVQPLVDGLSIDTLNVDIGDRVEAN 93
           K+   P+++ A A A     D + A GT    +++ +   V    ID LN   G  V   
Sbjct: 23  KKARPPALVEAVAIAPTRFTDNVEAVGTALANEQVILSAPVTE-RIDVLNFTDGGFVSKG 81

Query: 94  AILAVLSSDSLILQKSQLEANKAKAQAAVAQAKAQVLEAEASANDANRQRDRAAKLGQSG 153
            ++A                     + AV Q KA++  AEA+A  A++Q  R   L   G
Sbjct: 82  QVIA---------------------RMAVGQEKAELAAAEATALQADQQLKRIQALKSRG 120

Query: 154 SGSVSQVEQTQAQAEVAAAKLNAARQAVSAGEADIKVVDAQIADIDLKLTRTGVKTPVAG 213
             + + VEQ  A A  A A  + AR    AG  D                RT ++ P +G
Sbjct: 121 FATGATVEQQIALANSARANADLAR----AGIGD----------------RT-IRAPFSG 159

Query: 214 IVSAKNAKVGAIASGAGNPLFTVIKDGAIELVADLSETDIQKVKIGQKAY-LTVAGGAEK 272
            VS +    GA+ + AG  + TV     I+L   + ET +  ++ G     L+ A     
Sbjct: 160 WVSLRTVSPGAVIT-AGTAIATVSDISRIKLDFTVPETRLSMIREGMPIKALSAAWPDRP 218

Query: 273 IEGKVRLVSPTVDPTTRLGSVHVVLPENSPA-RSGMYASAAIIVEETNALALPLSAVTSG 331
             G +  + P +DP TR   V  ++P    A + GM  + ++   E  +L +P  AV   
Sbjct: 219 FNGTIATIDPVIDPATRAVRVRAIMPNPDKALKPGMLLTVSVFSRERQSLGVPELAVIGD 278

Query: 332 REGSTTRKVEGDVVKQVKIETGIEDSGFIEIVSGLAAGDKVVEKAGAFVRDG 383
            +      ++G   K+ K+ETGI  +G +EI+ G+ AG ++V +    + DG
Sbjct: 279 GDERFVFVLDGRTAKRTKVETGIRQNGLVEILGGVKAGQQIVTEGVVKLTDG 330