Pairwise Alignments

Query, 256 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  185 bits (469), Expect = 9e-52
 Identities = 109/259 (42%), Positives = 158/259 (61%), Gaps = 6/259 (2%)

Query: 1   MKFFATL--LAGTAFAVSAFTASADVRFGIMNESYPPFFAKDASGKWQGWEIDLMDAVCA 58
           MK  A L  LA + F++ +  A   ++ GI   +YPPF  K   G   G++ D+ +A+C 
Sbjct: 1   MKKLALLGALALSVFSLVSQAAEKPLKIGI-EAAYPPFAFKQPDGSIAGFDYDIGNALCE 59

Query: 59  EMKEKCSIVELSWDGLIPALQTKKFDVIWSSMSNTQEREKVIDFTNKYYNTPSKLIGAKG 118
           EMK KC+ VE  +DGLIPAL+ +K D I SSMS T +R+K +DFT +YY TP++L+   G
Sbjct: 60  EMKTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDG 119

Query: 119 EKPGAAPEDVKGKTIGIQVATIQSEYYKKYFAAV-ADEKTYQTLDEAFQDLAAGRIDYVF 177
                + +++KGK IG+Q  +I   + K+   A  A    Y T +E + D+AAGR+D   
Sbjct: 120 TTVSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTV 179

Query: 178 GDSLVL-DAFVKSDAGKDCCADMGNVADDKEIMGLGVSGGLRKDDTELKNKLNAAIAAVR 236
            D+ +L D F+K+DAGK   A +G    D +  G G+   +RK D    +++NAAI A+R
Sbjct: 180 ADATLLEDGFLKTDAGKG-FAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIR 238

Query: 237 ASGKYDEITKKYFSFDIYG 255
           A+GKY EI  KYF+FDIYG
Sbjct: 239 ANGKYKEIESKYFNFDIYG 257