Pairwise Alignments

Query, 256 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  184 bits (468), Expect = 1e-51
 Identities = 103/248 (41%), Positives = 145/248 (58%), Gaps = 6/248 (2%)

Query: 8   LAGTAFAVSAFTASADVRFGIMNESYPPFFAKDASGKWQGWEIDLMDAVCAEMKEKCSIV 67
           L G    + A  ASA+        +YPPF   DA  K  G+++D+  A+C +MK +C++V
Sbjct: 7   LLGACALLLAGAASAETLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMKVECTLV 66

Query: 68  ELSWDGLIPALQTKKFDVIWSSMSNTQEREKVIDFTNKYYNTPSKLIGAKGEKPGAAPED 127
              W+G+IPAL  +K+D I +SM +T+ER K I FT+ YY TP  +  AK  K  +A  D
Sbjct: 67  AQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSKIDSAQTD 126

Query: 128 VKGKTIGIQVATIQSEYYKK-YFAAVADEKTYQTLDEAFQDLAAGRIDYVFGDSLVLDAF 186
             G T+G Q ++ Q+ Y +  Y  A AD K Y T+DEA  DLAAGR+D V  D   L  +
Sbjct: 127 FVGYTVGAQSSSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLDGVIADKFPLHEW 186

Query: 187 VKSDAGKDCCADMGNVADDKEIMGLGVSGGLRKDDTELKNKLNAAIAAVRASGKYDEITK 246
           +  + G DCC  +G+VAD K    + V    RKDD  L+ +LN A+  + A+G Y +I  
Sbjct: 187 MNKNGG-DCCKILGDVADTKADAAIAV----RKDDEALRQRLNTALQQIVANGTYQKIAS 241

Query: 247 KYFSFDIY 254
           KYF+FDIY
Sbjct: 242 KYFAFDIY 249