Pairwise Alignments

Query, 229 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 236 a.a., L-lysine and D-lysine ABC transporter, permease component 2 (from data) from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 3e-37
 Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 1   MDFSWVAKYWPLLLSGAWQTLALLVISVSIGFVLAIGLAFAQVSGGRVTKILARAYCTFF 60
           +D   + +Y P  + G   T  L+ IS S+G VL + LA A++S   V + +A  Y  FF
Sbjct: 11  LDPDLLERYGPRFIDGLLVTAKLVAISFSLGAVLGLLLALARLSRSLVLQRMAAGYVYFF 70

Query: 61  RGTPLLIQLWLLYYGVGSFLPMIPGLRQSF-MWPVLREGFFFAAVSFTLNYAAYEAEVLR 119
           RG+PLL QL+LLYYG+GS    + G  Q   +W   R+ +F   ++FTLN AAY+AE+ R
Sbjct: 71  RGSPLLAQLFLLYYGLGS----LKGFWQDVGLWWFFRDAWFCTLLAFTLNTAAYQAEIFR 126

Query: 120 GALLAVPKGELEAGRAFGMGRFTLIRRIWLPRAIRIALPTITGEVVMQLKATPLAFTVTV 179
           G+L+AV  G+ EA RA  + R T   ++ LP+++ +A+  +  E+++ +KA+ +A  VT+
Sbjct: 127 GSLMAVAPGQHEAARALNLKRSTTFFKVILPQSLLVAIGPLGNELILMIKASAIASLVTI 186

Query: 180 MDLYAVAYKVRQDTLLVYEPLIVVTVFYLILTAIIARCFGLVERQV 225
            DL  V  K+       ++  +   V YL++  ++ R    +E ++
Sbjct: 187 YDLMGVT-KLAFSRSFDFQIYLWAAVLYLVIVELVRRLLKHLEARL 231