Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  362 bits (929), Expect = e-104
 Identities = 211/477 (44%), Positives = 278/477 (58%), Gaps = 27/477 (5%)

Query: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
           SF  LGLSE +V ++   GYT PTP+Q +AIP +L+GRDL+  AQTGTGKT  F LPI+E
Sbjct: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query: 75  MLMK-----QADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINK 129
            L       ++ R   R  R L+L PTREL  Q+ D+ + + +  PL    + GG  +N 
Sbjct: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121

Query: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMV 189
           Q   + KG D+LVA PGRLLDL  +  + L+ V  LVLDEAD+MLD+GFIHD++K+   +
Sbjct: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 190 PPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLL 249
           P KRQ LLFSAT  K I++LA   L +P ++EVTPP    +++EQ V+ +   + K  LL
Sbjct: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASH-KRALL 240

Query: 250 KKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEI 309
              +      + +VF RTKHGA +L ++LE  G   A+IHGNKSQ  R +AL  FK   +
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 310 KVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRL 369
           +VLVATD+AARG+DI  + HV N++LP V + YVHRIGRT RAGR G AI+  APDE +L
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LHDIEK----------LMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGG 419
           L  IE+          LM  D      E+P     P   NN RGGRN    Q RG  EGG
Sbjct: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERP--QNNGRGGRNQ---QARG--EGG 413

Query: 420 RHNGESRPSRNHAPRDADNDLEVTSDFKRVKQAEGDAGRPAGPR-KQRRPARKPGGS 475
           +     R  +      A        D    K+  GD  +P  PR K+ RP +    S
Sbjct: 414 KDTNGGRKDKGKDKGKARQQAAAKPD---DKEKSGDKQQPRKPRDKKSRPQQASNNS 467



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 391 GLASPTRPNNNRGGRNNNGGQPRGPREGGRHNGESRPSRNHAPRDADNDLEVTSDFKRVK 450
           G  +  R N    G+  NGGQPR    GG   GE RP R +    A  D        R +
Sbjct: 517 GQGNGQRSNAGGQGQARNGGQPRS---GG---GEKRPPRANNGGGARRD----GGGGRGR 566

Query: 451 QAEGDAGR-PAGPRKQRRPARKP 472
            A  DA R     R  R+P ++P
Sbjct: 567 PARDDAARQEPAVRNPRQPEKQP 589