Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  384 bits (986), Expect = e-111
 Identities = 217/458 (47%), Positives = 283/458 (61%), Gaps = 15/458 (3%)

Query: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
           SF+ LGL+  I+ ++ + GY  PTPIQ +AIP +LEGRDL+  AQTGTGKTA F LP+++
Sbjct: 2   SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 75  MLMK-QADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQ 133
            L+  Q      R  R LIL PTREL  QIG+N+R + K   +R   V GG SIN Q ++
Sbjct: 62  HLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK 121

Query: 134 LEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKR 193
           L  G D+LVATPGRLLDL  +NA+ L ++  LVLDEAD+MLD+GFIHD+R++   +P KR
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181

Query: 194 QTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSL 253
           Q LLFSAT    I  LA   L +P+++EV     A+++V Q+VHFV  K  K +LL + +
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFV-DKKRKRELLSQMI 240

Query: 254 NENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLV 313
            +    + +VF RTKHGA  L + L   G + A+IHGNKSQG R RAL  FK G+I+VLV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 314 ATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDI 373
           ATD+AARG+DI  + HV NY+LP VP+ YVHRIGRT RA   G A++    DE +LL DI
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 374 EKLMKIDIP--VASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGGRHNGESRPSRNH 431
           EKL+K +IP     G  P          N R  R   GG+ RG  +GG         R+ 
Sbjct: 361 EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRGGGGGRGRGQNQGG-------AGRSQ 413

Query: 432 APRDADNDLEVTSDFKRVKQAE--GDAGRPAGPRKQRR 467
            PR  D+         R  + +  GD  RP  PR+ RR
Sbjct: 414 QPRRQDSGAAKAKPKPRTGEGKTAGDKARP--PRRPRR 449