Pairwise Alignments

Query, 431 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) from Agrobacterium fabrum C58

Subject, 499 a.a., penicillin-binding protein from Agrobacterium fabrum C58

 Score =  316 bits (810), Expect = 9e-91
 Identities = 189/458 (41%), Positives = 265/458 (57%), Gaps = 53/458 (11%)

Query: 20  FCAILSLQASPAQAGYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLYMTFEALHAGR 79
           F A  S+Q + A   YA  ++DA +GKVL   + D L +PASLTKMMTLY+TFEAL++GR
Sbjct: 37  FIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMMTLYLTFEALNSGR 96

Query: 80  LRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDHLGGSEAR 139
           +  D ++T+S N A   PSKL VR G + TV +A+  ++ +SANDMA  +G+HLGGSE R
Sbjct: 97  ISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMATALGEHLGGSEDR 156

Query: 140 FAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYGLFAMESF 199
           FA MMT KAR LGM++T +RNA+GLP+ +Q+TTARD ARLG+AL++ FP+ YG F+  +F
Sbjct: 157 FARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRTF 216

Query: 200 SFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKTARSRD 259
           +F  + I  HN L+   +G+DGIKTGYT A+G NL ++   +GR +V VVLGG+++ +RD
Sbjct: 217 NFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVAVVLGGRSSAARD 276

Query: 260 AQMAALLDKAVPQASRSRNTEQLVA--SANVSRTFDVAAALPPASV-------------- 303
           A M  L+   +PQASR  N+  +    S  V     VAAA P  SV              
Sbjct: 277 ATMRKLVATYLPQASRGGNSNLIAQTRSGPVEEPVTVAAAAPYPSVAVAATDSGLPNAGP 336

Query: 304 ---------PLPMFAERRADPV--AMQIAT--------------------ANSQMADMMQ 332
                    P+  FA   ++    AM+ AT                     NS   D + 
Sbjct: 337 VPQTRYEEAPVTAFAGSSSNAAVKAMEAATWQKGKDPIVRAPVAPDRKLITNSTKVDNIV 396

Query: 333 VSAIPRPAPAAATTGERSR-----WEVQIAATDSEAAARSLLANARSNIGSYTGIA-PYT 386
            ++    A AA +   R+      W +QI A+  E +AR LL NA+   G+    A P+T
Sbjct: 397 TASTAASASAAPSVSPRAEAPQGGWVIQIGASPDENSARGLLQNAQEKGGAALRSAKPFT 456

Query: 387 EAVQSGSATLYRARFTGFEDQSSAVSACKELKAQSYAC 424
            A     + +YRARF GF+ Q++AV+AC  LK +  +C
Sbjct: 457 VAFSKDGSQIYRARFGGFDGQNAAVNACNVLKKKGVSC 494