Pairwise Alignments

Query, 317 a.a., ABC transporter, substrate binding protein (proline/glycine betaine) from Agrobacterium fabrum C58

Subject, 338 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 65/320 (20%), Positives = 121/320 (37%), Gaps = 39/320 (12%)

Query: 11  LAAAISSMTFSAAVAAEPASCGTVRFSDVGWTDITATTATATVLLKSLGYE--TDVKLLS 68
           LAA+++++  S A     A+   V F+D+ W   +  T    V+++  GY+  TD    +
Sbjct: 8   LAASLTTLGLSVAALPVSAAEAPVHFADLNWESGSLITEVLRVIVEK-GYDLPTDTLPGT 66

Query: 69  VPVTYTSLKNKDIDVFLGNWM--------PTMEGDIAPYRDDKSVETLRENLTGAKYTL- 119
                T+L   DI V    W            EG +    D  +V+   E     +Y + 
Sbjct: 67  TITLETALAKNDIQVIGEEWAGRSPVWVKAEAEGKVVGLGD--TVKGATEGWWVPEYVVK 124

Query: 120 ---ATNAKGAELGIKDFKDIAAHSS-----ELGGKIYGIEPGNDGNRLILDMVAKDSFGL 171
              A   K     +K  KD+A +       E  GK   +         +++     ++GL
Sbjct: 125 GDPAKGIKPLAPELKSVKDLARYKDVFKDPESPGKGRFLNSPIGWTSEVVNKQKLKAYGL 184

Query: 172 KSFEVVESSEQGML--SQVARAEKSGEPIVFLGWEPHPMNANFKLTYLTGG--------- 220
               V   S  G    +++A + + G+P++F  W P P+   +KL  L            
Sbjct: 185 DDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLEEPPFDAEAWKT 244

Query: 221 -DEVFGPN-----FGGATIYTNVRKGYVEECPNVGAFLKNLQFSLPMENEIMGKILNDGL 274
             +   PN        + +   V   + +E P +  F + ++F +   N+ +  +  +  
Sbjct: 245 LTDADNPNPKPTRSLASKLSIGVSTPFQKEHPQIAQFFEKVEFPIEPLNKALATMSENHT 304

Query: 275 EGEAAATAWLKANPAAIEPW 294
                A  +LK +P   + W
Sbjct: 305 APREVAQMFLKEHPQVWKAW 324