Pairwise Alignments

Query, 368 a.a., ABC transporter, substrate binding protein (branched chain amino acid) from Agrobacterium fabrum C58

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  273 bits (698), Expect = 6e-78
 Identities = 155/360 (43%), Positives = 216/360 (60%), Gaps = 6/360 (1%)

Query: 4   KTLTSVTLAASFAFAPLAHAEIVIGLIAPLTGPVAAYGDQVKNGAQTAVSEINKKGGILG 63
           K   ++ +A +   +    A++ IG+  P+TG  AA+G+Q   GAQ A  +IN  GG+ G
Sbjct: 8   KGFLALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNG 67

Query: 64  EQVVLKLADDGGEPKQGVSAANQLVAEG-IHFVVGPVTSGVAIPASDVFAENGVLMVTPT 122
           E++VL   DD  EPKQ V+ AN+LV +  +  VVG   S   IPAS+V+ E GV+ +TP 
Sbjct: 68  EKIVLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPG 127

Query: 123 ATAPGLTNRGLSNVFRTCGRDDQQAEVAAKYVLANLKGKKIAIIHDKGAYGKGLADSFKA 182
           +T P +T RGLS +FR CGRDDQQ  VA  Y++  LKGKK+A++HDK  YG+GLAD+ KA
Sbjct: 128 STNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKA 187

Query: 183 TLNAGGVTEVLYDALTPGEKDLGALTARLKSDNADIVYFGGYHPEAGLLVRQLKDIGSK- 241
            L   GV  VLY+ LT GEKD  A+  +++S  AD+VYFGG HPEAG LVRQL++ G K 
Sbjct: 188 QLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKD 247

Query: 242 AAVIGGDGLSNSEFWNI--GAKAGEGTIFTNASDALKNDDSKAAAEALKAANIPAEAFTL 299
              +  DG+   E  +   GA+  +G   T  +D     DSKA  E  + A    E +TL
Sbjct: 248 VKFMSDDGIVTDELVSTAGGAQYVDGVYMTFGADPRLLPDSKAVVEEFRKAGTEPEGYTL 307

Query: 300 NAYAAVEVLKAGIEKAGSAKDSEAVAKVLKSGEAFPTAIGKVTYGDNGDLTSQAFSLFKW 359
            AYA+++ L A    A S K  +A AK LK+     T +G+  +   GDLT   + +++W
Sbjct: 308 YAYASLQALAAAFNGAKSNKGEDA-AKWLKANPV-QTVMGEKKWDSKGDLTVSDYVVYQW 365