Pairwise Alignments

Query, 319 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 5e-17
 Identities = 72/247 (29%), Positives = 104/247 (42%), Gaps = 18/247 (7%)

Query: 26  IIASWRRCMVKHRLAPEENRKPIFLSE-IEFRRARESAAGLIAESTDELDRIFHSVGKSG 84
           I ASWRR +       +  +  + L +  + R   E    LI   T ELD +    GK+G
Sbjct: 38  IDASWRRSLGHGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYLVARQGKAG 97

Query: 85  CCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEESVGTNGIGTALVDERSVVVYR 144
             ++L DAQ   L   G     +      L  G+ WSE   GTN IGTA+V+ R  ++  
Sbjct: 98  I-VILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINC 156

Query: 145 DQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRDDINEMTFSFVTQAVKDAAQRIEGN 204
            +H+    +   CT+ P+RD  G V G LDI+  R+ +       ++  +  AA  IE  
Sbjct: 157 GEHYLDRLSPFSCTSVPLRDPRGEVIGVLDIT--REGVMAQPQDSLSTLML-AAGNIESR 213

Query: 205 LFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGATRAARLALKLDDIRIAQGLPAADI 264
           LF    P   +             LA       L +     LAL LD   +A    A  +
Sbjct: 214 LFGLCHPDQLV-------------LAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQL 260

Query: 265 LQEQRHD 271
           LQ  RH+
Sbjct: 261 LQVPRHE 267



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 276 LAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKK 315
           L ++E   +R  L+R  GNV+ AA+ LGISRATL+RK+K+
Sbjct: 594 LKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQ 633