Pairwise Alignments

Query, 319 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  119 bits (297), Expect = 3e-31
 Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 6/244 (2%)

Query: 7   HAERVYETARHRSA-AASSPIIA-SWRRCMVKHRLAPEENRKPIFLSEIEFRRARESAAG 64
           HA +V+  A   +    S P IA SW RC+  + L P     P+ L       +RE    
Sbjct: 9   HARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQ 68

Query: 65  LIAESTDELDRIFHSVGKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEES 124
           ++  +  E++ +   +  +G  +LLTDA+GV L    A  + R F   GLW GA WSE  
Sbjct: 69  VLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAR 128

Query: 125 VGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRDDINE 184
            GTNGIGT LV+ +++ +++++HF   +T L C+ +P+ D  G +   LD+S+ R D++ 
Sbjct: 129 EGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSR 188

Query: 185 MTFSFVTQAVKDAAQRIEGNLFRRAFPG---ARIVVVPTGFGA-AMSLLAVDQDDLVLGA 240
            +       V  +A+ IE   F R F      R  +     G  +  LLA D D  +  A
Sbjct: 189 QSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAA 248

Query: 241 TRAA 244
            ++A
Sbjct: 249 NQSA 252



 Score = 42.0 bits (97), Expect = 4e-08
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 261 AADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDV 318
           AA+I  E    G   L +AER AL+ VL   + ++T+ A  LGISR TL+RK++K  +
Sbjct: 612 AAEI--EGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRKHGI 667