Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

 Score =  508 bits (1309), Expect = e-148
 Identities = 313/702 (44%), Positives = 420/702 (59%), Gaps = 80/702 (11%)

Query: 4   KVKENEEAENERDGATDGPLLDLSDDA-----VKKMIKAAKKRGYVTMDELNSVLPSEEV 58
           K+ + +E    ++   D  +L   D A     +K +I   K RGY+T  E++  LP + V
Sbjct: 133 KISKAKERALMKEFGLDETVLSEEDLAKRRSRLKTLITLGKTRGYLTHGEISDHLPDKLV 192

Query: 59  TSEQIEDTMAMLSDMGINVIEDE-DAE-----EAAPAEDDGDSDNEESEGGELAPSGGTA 112
            +E +E  + ML+DMG+ V E   DAE       AP     +   EE+E          A
Sbjct: 193 DAETMEVVVTMLNDMGVAVYEQTPDAETLLLNNTAPTATTVEEAEEEAEA---------A 243

Query: 113 LATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTF 172
           L+T   +    RT DPVRMY+REMG+VELL+REGEI IAKRIE G   M+  +  SP T 
Sbjct: 244 LSTVDSE--FGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATI 301

Query: 173 QALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRL 232
            A++     + EG  ++  I+D               F +P   EAD   AEE       
Sbjct: 302 AAILEMAATIREGKVVISTIVD--------------GFSNPN--EADDYVAEE------- 338

Query: 233 RAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRK 292
                D D  D        EE+++D    + +L     EL+   +E  D IA  ++K+ K
Sbjct: 339 -----DFDEFD--------EEDDDDGKGGSKALTKKLEELKRDALERFDRIASLFEKVHK 385

Query: 293 LQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLM 352
           + D++        G  +    +  + + ++L+T   +    +   D +  Q+ D+ K+  
Sbjct: 386 IYDKE--------GYGTPAYVKAQEAMSEELMTIRFTAKTIEKLCDLVRTQVDDVRKK-- 435

Query: 353 QNEGRLLRL-AESYGVKRDSFLEQYHGAELDPNWMKS-ITNL--------AARGWKEFAR 402
             E  L R+  +  G  ++ F+  + G + + N + S + NL        A + W     
Sbjct: 436 --ERELRRIIVDKCGFPQEEFIRDFSGFDKNGNVVASNLLNLKWVEKQAAAGKPWSAVLA 493

Query: 403 EESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIA 462
                ++E++Q + ++ +   + + + + I   + +GE  +R AKKEM+EANLRLVISIA
Sbjct: 494 RNIPPVQELQQRLTDIQSRVVVPLTQLKDINKRMNEGESSSRDAKKEMIEANLRLVISIA 553

Query: 463 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 522
           KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
Sbjct: 554 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 613

Query: 523 IPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPV 582
           IPVHMIETINK+ R SRQ L E G EP    LA K+ +P +K+RK++KIAKEPIS+ETP+
Sbjct: 614 IPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPI 673

Query: 583 GDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDH 642
           GD++DSHLGDFIED +   PI+AA+QA LR+    +L SLTPRE +VLRMRFGI M+TDH
Sbjct: 674 GDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDH 733

Query: 643 TLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684
           TLEEVG+QF VTRERIRQIEAKALRKLKHPSRS KLRSF+D+
Sbjct: 734 TLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDT 775