Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  203 bits (517), Expect = 9e-57
 Identities = 97/234 (41%), Positives = 158/234 (67%), Gaps = 3/234 (1%)

Query: 437 QKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 496
           QKG+   R   K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG+
Sbjct: 90  QKGDPAGR---KRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGF 146

Query: 497 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAE 556
           +FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N  +R +R++  ++  EP+PEE+A 
Sbjct: 147 RFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIAT 206

Query: 557 KLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTT 616
            L  P+ +V+++L + +   S++  +G + D  L D + D     P +     +L ++  
Sbjct: 207 LLEKPVAEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSQSID 266

Query: 617 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670
           + L  LT ++  V+  RFG+  +   TLE+VG +  +TRER+RQI+ + L++L+
Sbjct: 267 QWLGELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLR 320



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 15/135 (11%)

Query: 55  SEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGTALA 114
           S+EV    I+D + ++             E     E D  SD             G++L 
Sbjct: 4   SKEVPEFDIDDDVLLM-------------ETGIVLETDVVSDEPAVSSVRTRAKSGSSLK 50

Query: 115 TAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQA 174
             K  + + R  D  ++YL E+G   LLS E E+  A+  + G       + ES L    
Sbjct: 51  QHKYIDYS-RALDATQLYLNEIGFSPLLSPEEEVHFARLSQKGDPAGRKRMIESNLRL-V 108

Query: 175 LIIWRDELNEGTTLL 189
           + I R  +N G +LL
Sbjct: 109 VKIARRYVNRGLSLL 123