Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 616 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens SBW25

 Score =  533 bits (1373), Expect = e-156
 Identities = 323/658 (49%), Positives = 414/658 (62%), Gaps = 58/658 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90
           +K++I   +++GY+T  E+N  LP +    EQ+ED + M++DMGINV E      AAP +
Sbjct: 11  IKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE------AAPDK 64

Query: 91  DD---GDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGE 147
           D     D+D +E+   E       A A A  +    RT DPVRMY+REMG+VELL+REGE
Sbjct: 65  DSLMLADADTDEAAAEE------AAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGE 118

Query: 148 IAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPE-AKA 206
           I IAKRIE G   ++  +   P T   ++    E    TT    + D+ + Y  P+   A
Sbjct: 119 IEIAKRIEEGIREVMGAIAHFPGTVDHIL---SEYTRVTTEGGRLSDVLSGYIDPDDGIA 175

Query: 207 APQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLA 266
            P  + P  ++A  KAA+  + T        ++D  +  GD       +ED+ ES     
Sbjct: 176 PPAAEVPPPVDA--KAAKADDDT--------EDDDAEASGD-------DEDEVESGPD-P 217

Query: 267 AMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITA 326
            + A+    V + ++      KK  +   Q +   LA                  +L   
Sbjct: 218 VIAAQRFGAVSDQMEITRKALKKHGRSNKQAIAELLALA----------------ELFMP 261

Query: 327 VKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNW 385
           +K   L   + + LVE++    +RL   E  +++L      + R  FL Q+ G E+D +W
Sbjct: 262 IK---LVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMPRTDFLRQFPGNEVDESW 318

Query: 386 MKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARI 445
             ++    A+  +   R + + IR  +Q++  L TETG++IAE + I   +  GE +AR 
Sbjct: 319 TDALAKGKAKYAEAIGRLQPDIIR-CQQKLTALETETGLTIAEIKDINRRMSIGEAKARR 377

Query: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505
           AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 437

Query: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565
           IRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEEL E++ MP +K+
Sbjct: 438 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 497

Query: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625
           RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED     PID A   +L+E T  VL+ LT R
Sbjct: 498 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAR 557

Query: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           E +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 558 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD 615