Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Serratia liquefaciens MT49

 Score =  531 bits (1368), Expect = e-155
 Identities = 317/655 (48%), Positives = 408/655 (62%), Gaps = 55/655 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLLLA 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E+   +D +  E          A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ENSNSTDEDAEEAA--------AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D +  G   L ++I   T +  P A+    
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLI---TGFVDPNAE---- 173

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
               E I                 APT     T VG + L  EE+ +DD+E +      +
Sbjct: 174 ----EDI-----------------APT----ATHVGSE-LSTEEQNDDDEEEDEDEEEDD 207

Query: 270 AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKS 329
             + P++           +K   L+DQ    R+       S      + LK  L    K 
Sbjct: 208 NSIDPELAR---------QKFADLRDQYEATRVVIKKNGRSHASAAEEILK--LSEVFKQ 256

Query: 330 LSLNQNRIDSLVEQLYDISKRLMQNEGRLLRL-AESYGVKRDSFLEQYHGAELDPNWMKS 388
             L   + D LV  +  +  R+   E  +++L  E   + + +F+  + G E    W ++
Sbjct: 257 FRLVPKQFDFLVNSMRTMMDRVRTQERIIMKLCVEQCKMPKKNFVTLFAGNETSTTWFEA 316

Query: 389 ITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKK 448
              + A+ W E  ++ +  ++   Q+++ +  ETG++I + + I   +  GE +AR AKK
Sbjct: 317 ALAM-AKPWSEKLKDVAEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 375

Query: 449 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 508
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 376 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 435

Query: 509 AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKV 568
           AITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKV
Sbjct: 436 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 495

Query: 569 LKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREER 628
           LKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE +
Sbjct: 496 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAK 555

Query: 629 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 556 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 610