Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 660 a.a., RNA polymerase, sigma 70 subunit, RpoD from Enterobacter asburiae PDN3

 Score =  521 bits (1342), Expect = e-152
 Identities = 312/656 (47%), Positives = 405/656 (61%), Gaps = 53/656 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K +++  K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 54  LKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLA 113

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E   ++D +  E          A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 114 ETSNNTDEDAEEAA--------AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 165

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D +      L ++I   T +  P A+   +
Sbjct: 166 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI---TGFVDPNAE---E 219

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
             +P       + ++E+           DED  +   D    ++  +DD+  +  LA  +
Sbjct: 220 DMAPTATHVGSELSQEEMDD--------DEDEDEEESD----DDTADDDNSIDPELAREK 267

Query: 270 -AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVK 328
            AELR Q   T DTI    +     Q++ ++                       L    K
Sbjct: 268 FAELRTQYEVTRDTIKAKGRSHAAAQEEILK-----------------------LSEVFK 304

Query: 329 SLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMK 387
              L   + D LV  +  +  R+   E  +++L  E   + + +F+  + G E    W  
Sbjct: 305 QFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPKKNFITLFTGNETSETWFN 364

Query: 388 SITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAK 447
           +   +  + W E   +  + +    Q++  +  ETG++I + + I   +  GE +AR AK
Sbjct: 365 AAIAMN-KPWSEKLHDVKDDVHRGLQKLHQIEEETGLTIEQVKDINRRMSIGEAKARRAK 423

Query: 448 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 507
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 424 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 483

Query: 508 QAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRK 567
           QAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RK
Sbjct: 484 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 543

Query: 568 VLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREE 627
           VLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE 
Sbjct: 544 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 603

Query: 628 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 604 KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 659