Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Escherichia coli ECOR38

 Score =  527 bits (1358), Expect = e-154
 Identities = 316/656 (48%), Positives = 406/656 (61%), Gaps = 55/656 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E+  D D  E+           A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ENTADEDAAEA----------AAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D +      L ++I   T +  P A+   +
Sbjct: 119 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI---TGFVDPNAE---E 172

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
             +P       + ++E            DED  +  GD    ++  +DD+  +  LA  +
Sbjct: 173 DLAPTATHVGSELSQEDLDD--------DEDEDEEDGD----DDSADDDNSIDPELAREK 220

Query: 270 -AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVK 328
            AELR Q + T DTI    +     Q++ ++                       L    K
Sbjct: 221 FAELRAQYVVTRDTIKAKGRSHAAAQEEILK-----------------------LSEVFK 257

Query: 329 SLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMK 387
              L   + D LV  +  +  R+   E  +++L  E   + + +F+  + G E    W  
Sbjct: 258 QFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFN 317

Query: 388 SITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAK 447
           +   +  + W E   + S  +    Q++Q +  ETG++I + + I   +  GE +AR AK
Sbjct: 318 AAIAMN-KPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAK 376

Query: 448 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 507
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436

Query: 508 QAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRK 567
           QAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RK
Sbjct: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496

Query: 568 VLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREE 627
           VLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE 
Sbjct: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREA 556

Query: 628 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 557 KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612