Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score =  531 bits (1369), Expect = e-155
 Identities = 320/657 (48%), Positives = 413/657 (62%), Gaps = 59/657 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP + + S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E+  D D  E+           A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ENTADEDAAEA----------AAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 118

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKA--A 207
           IAKRIE G   +   + E P     L+   D +  G + L ++I   T +  P A+   A
Sbjct: 119 IAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLI---TAFVDPNAEEDLA 175

Query: 208 PQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAA 267
           P   +PE  E                    D+ + D   D    EE+E+D D+ N    +
Sbjct: 176 PN-TTPENAEP------------------ADDGIDD---DDDESEEDEDDTDDDN----S 209

Query: 268 MEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAV 327
           ++ EL  Q             K  +L+DQ    R++      S       E+ ++L    
Sbjct: 210 IDPELARQ-------------KFAELRDQYEATRVSIKAHGRS-HPTAIDEI-NKLSEVF 254

Query: 328 KSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWM 386
           K   L   + D LV  +  +  R+   E ++++L  E   + + +F+  + G E +  W 
Sbjct: 255 KQFRLVPKQFDLLVNNMRAMMDRVRAQERQIMKLCVELCKMPKKNFVTLFTGNETNRKWF 314

Query: 387 KSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIA 446
            +  ++  + W E  RE  + +    Q++Q +  ETG++I + + I   +  GE +AR A
Sbjct: 315 DAALSMG-KPWCEKLREVEDDVHRGLQKLQQIEDETGLTIEQVKDINRRMSIGEAKARRA 373

Query: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 374 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 433

Query: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
           RQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+R
Sbjct: 434 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIR 493

Query: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
           KVLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE
Sbjct: 494 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTARE 553

Query: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 554 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 610