Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 675 a.a., RNA polymerase sigma factor RpoD from Bosea sp. OAE506

 Score =  952 bits (2462), Expect = 0.0
 Identities = 509/694 (73%), Positives = 571/694 (82%), Gaps = 29/694 (4%)

Query: 1   MATKVKENEEAEN---ERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEE 57
           MATKV E ++A+    E    +DGPLLDL+D AV++MIK AKKRGYVT DELN VLPSEE
Sbjct: 1   MATKVSERDKADQATPEAPPTSDGPLLDLTDQAVRRMIKLAKKRGYVTYDELNEVLPSEE 60

Query: 58  VTSEQIEDTMAMLSDMGINVIEDEDAE-----EAAPAEDDGDSDNEESEGGELAPSGGTA 112
            TSEQIED +  LS+ GINV+++ED E      AA       +D EE EGG+L  +  +A
Sbjct: 61  FTSEQIEDVLGQLSEQGINVVDNEDPEASGEERAAARTGTNGADEEEVEGGDLVDASRSA 120

Query: 113 LATAKKK--EPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPL 170
           L    K+  EPT+RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRE MI+GLCESPL
Sbjct: 121 LPVETKRNLEPTERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPL 180

Query: 171 TFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTR 230
           TFQA+IIWRDELNE   LLR+IIDLE TY+GP+ K   Q    E  EA+   A E E   
Sbjct: 181 TFQAIIIWRDELNEAKVLLRDIIDLEATYAGPDGKNPTQIAG-EGGEAEAAPAAEGE--- 236

Query: 231 RLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKL 290
              AP GD          LPP+ +E DD E+N+SL+AMEAEL+P+V+ET D+IAD YKKL
Sbjct: 237 ---APEGD----------LPPDLDE-DDMENNVSLSAMEAELKPRVLETFDSIADNYKKL 282

Query: 291 RKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKR 350
           R+LQDQ +  RL  T  LS  Q+R+YK+LKD +ITAVKSLSLN NRI++LVEQLYDI+KR
Sbjct: 283 RRLQDQDIANRLENT-KLSPSQDRKYKKLKDDIITAVKSLSLNNNRIEALVEQLYDINKR 341

Query: 351 LMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIRE 410
           L+ +E RLLRLAESYGV R+ FL+Q+ G ELDP W+  ++ L +RGWKEF   E   I+ 
Sbjct: 342 LISHETRLLRLAESYGVGREDFLKQHVGGELDPKWILRVSKLGSRGWKEFVAAELERIKS 401

Query: 411 IRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGL 470
           +R EI  L++ETG+ I EFR+IV MVQKGEREAR AKKEM+EANLRLVISIAKKYTNRGL
Sbjct: 402 LRDEIHTLASETGLEIQEFRKIVLMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGL 461

Query: 471 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 530
           QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
Sbjct: 462 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET 521

Query: 531 INKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHL 590
           INKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETP+GDEEDSHL
Sbjct: 522 INKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHL 581

Query: 591 GDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQ 650
           GDFIEDKNA+LPIDAAIQ+NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQ
Sbjct: 582 GDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQ 641

Query: 651 FSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684
           FSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD+
Sbjct: 642 FSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 675