Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score = 1323 bits (3423), Expect = 0.0
 Identities = 684/684 (100%), Positives = 684/684 (100%)

Query: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
           MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
Sbjct: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 61  EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKE 120
           EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKE
Sbjct: 61  EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKE 120

Query: 121 PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD 180
           PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD
Sbjct: 121 PTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRD 180

Query: 181 ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDED 240
           ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDED
Sbjct: 181 ELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDED 240

Query: 241 VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA 300
           VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA
Sbjct: 241 VTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEA 300

Query: 301 RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR 360
           RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR
Sbjct: 301 RLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLR 360

Query: 361 LAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLST 420
           LAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLST
Sbjct: 361 LAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLST 420

Query: 421 ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 480
           ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
Sbjct: 421 ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 480

Query: 481 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ 540
           IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
Sbjct: 481 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ 540

Query: 541 MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL 600
           MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
Sbjct: 541 MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL 600

Query: 601 LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ 660
           LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
Sbjct: 601 LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ 660

Query: 661 IEAKALRKLKHPSRSRKLRSFLDS 684
           IEAKALRKLKHPSRSRKLRSFLDS
Sbjct: 661 IEAKALRKLKHPSRSRKLRSFLDS 684