Pairwise Alignments

Query, 850 a.a., bacteriophytochrome protein from Agrobacterium fabrum C58

Subject, 745 a.a., Phytochrome-like protein cph1 from Pseudomonas sp. DMC3

 Score =  282 bits (721), Expect = 6e-80
 Identities = 188/555 (33%), Positives = 289/555 (52%), Gaps = 50/555 (9%)

Query: 10  LTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGDLNGRTAEDVLGKK 69
           L NC  EPI  PG IQPHG L+        +++ S N   LL        R  E ++G+ 
Sbjct: 13  LANCADEPIRFPGAIQPHGLLLTLTEPALQIIQVSANVETLLA-------RAPESLIGQP 65

Query: 70  LVHDLRNA------LTVTGRTTRPAMLPAMETSDGRSFDISLHRYKSTTIIEFEPSGSDA 123
           L H L  A      L    + T     P     +G  F+  LHR++   I+E E    + 
Sbjct: 66  L-HSLIGAEHTAQVLQALQQATFSEAAPLRFELNGTEFEGLLHRHQGVLILELEIHVKNF 124

Query: 124 QPLGTAR------KMVDRIREADSVESLISRTTRLVKATLGYDRVMIYRFQEDGAGKVVS 177
           QP   A       +M+ R++ A ++++L   + + ++A  GYDRV+IYRF+E+G G+V++
Sbjct: 125 QPRNVAGVNTHLGRMLQRLQAATTLQALYDISVKEIQAMTGYDRVLIYRFEEEGHGQVIA 184

Query: 178 EAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVDVSGE-PLDL 236
           EA  P +E F G +FPASDIP+QAR LY  N LRII +A    +P++P +    + PLDL
Sbjct: 185 EASDPSMEVFNGLFFPASDIPEQARELYRTNWLRIIPNADYQPVPLVPKLRPDTQTPLDL 244

Query: 237 SYAHLRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVRIAAEMF 296
           S+A LRSVSPIHC+Y++NMGV +SMSIS++    LWGLI+C +  P  +   +R+A +  
Sbjct: 245 SFATLRSVSPIHCQYMKNMGVLSSMSISLLKGDKLWGLISCGNRQPLHVPHELRMACQTI 304

Query: 297 GEFFSMHLQVLKQKRRLDTINHAHAALDRFLRLAAHHANIEELLVDSFQDFAD------- 349
           G+  S+ +  ++    L+        ++   RL        + +VDS Q+  D       
Sbjct: 305 GQVLSLQISAME---TLELTRQREEKVEALARL-------NQAMVDSPQNVFDGLAQQPA 354

Query: 350 ----LMPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAIPEAE 405
               L+   G+ +      H +G  P  + I  L +++ +  E  V+A+H LS   P A 
Sbjct: 355 TLMALVNAGGIAIIEDKQLHRYGNCPAPEEIRALHKWLQARGE-PVFASHHLSSVYPPAA 413

Query: 406 IYAGTAAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEK--SYETGPMGDRLTPRKSF 463
            Y   A+G+LA+ L +   + +L+FR E+ +N+NW+G+P K    ET   G RL PR SF
Sbjct: 414 QYQSVASGVLAMSLPKPVDNGVLWFRPEVKENINWSGDPRKPLDLETSDAGMRLRPRTSF 473

Query: 464 AIWKETVRLQAQPWSEADREIAEAARIALVEVAFHHSELMAGERERAEVRQR-MLNEELN 522
            IWK  +   +  WS  DR  A   R + +E    +       RE+A V+ R  L   ++
Sbjct: 474 EIWKVEMAGISTKWSHGDRFAANDLRRSALE----NDLARQVRREQAAVQARDDLVAVVS 529

Query: 523 HRVKNVLAIIKSLVG 537
           H ++N + +I  L G
Sbjct: 530 HDLRNPMTVISMLCG 544