Pairwise Alignments

Query, 260 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 264 a.a., ABC-type spermidine/putrescine transport system, permease component II from Variovorax sp. SCN45

 Score = 70.5 bits (171), Expect = 3e-17
 Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 16/235 (6%)

Query: 6   AWGALTFGLLYFALPLIGMTNFS----LKMRRGEYSFDAYGKVLTDPRFQETFSYSVVMA 61
           A+ AL    +   L ++ +  F+    L +    +S   +  V   P F ++F  S+ +A
Sbjct: 10  AFNALVIVFMLAPLVVVCIVAFTPENTLTIPTTRFSLRWFEAVFAHPDFMQSFWNSLWLA 69

Query: 62  LFTIVFGVLLVVPTAYWV-RLKLPGLRPYIEFITLLPLVIPAIVIVFGYIRLYNTSSWLP 120
           L +     LL VP    + R +  G R ++  + L PL++P +V+    +RL+       
Sbjct: 70  LSSATIATLLAVPAGMAITRYEFAG-RDFLNGLFLSPLIVPHLVLGVALLRLF------A 122

Query: 121 LTGTTFGTNLLLMFGYATLALPYMYRAVDTGLRTIDVSTLTEAAQSLGAGWTTILSRIIL 180
           L G T     L+M  +A +  PY  R V   L   D S   +AA SLGA   T+  RI L
Sbjct: 123 LVGGTGSFGWLVM-AHALIVTPYTLRLVVAALVGFDRSA-EQAALSLGASQATVFRRITL 180

Query: 181 PNVLVAVLSGAFLTFAIVIGEFTMAALLNRPAFG--PYMQLLGANRAYEPAALAV 233
           P +L  V  G  L F     E TM+  +  P+    P    + A  + +P   AV
Sbjct: 181 PMILPGVTGGWMLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAV 235