Pairwise Alignments

Query, 512 a.a., IS3 family transposase from Agrobacterium fabrum C58

Subject, 301 a.a., Tn4652, transposase subunit B from Pseudomonas putida KT2440

 Score =  113 bits (283), Expect = 8e-30
 Identities = 81/293 (27%), Positives = 138/293 (47%), Gaps = 26/293 (8%)

Query: 228 QLIDALKEVYRLPELLAQLRIARSSYFYHRARM---------CLADKYAAVRLSLAEIFE 278
           QLID  ++ + +  L   L+++ S+Y  H AR+          + D+  AV++    +++
Sbjct: 4   QLIDKHRQSFGVEPLCRVLQVSPSAYRRHAARLRDRSRRSARAIRDEELAVQIH--RVWQ 61

Query: 279 ANRRCYGYRRLQASLARKSVIVSEKVVQRLMKQEHLA-VARPRRRRFGSYLGEISPAPEN 337
            N   YG R++   + R+  +V+   V+RLM++  L  V R      G  +    P P+N
Sbjct: 62  ENYEVYGARKVWRQMHREHQVVARCTVERLMREMGLCGVTR------GKTVKTTQPDPDN 115

Query: 338 -----LINRDFHADAPNVKWLTDITEFQIPAGKVYLSPIIDCFDGMVISWSIGTQPDAGL 392
                L+ R F A+ PN  W+ D T      G  Y++ I+D +   ++ W +        
Sbjct: 116 ANPRDLVKRQFTAERPNQLWVADFTFVSTWQGFAYVAFIVDVYSRFIVGWRVSRHMRTEF 175

Query: 393 VNTMLDAAIGTVANGEERPIIHSDRGAHYRWPGWLTRISEARLVRSMSRKGCSQDNAACE 452
           V   L+ A+ T      R + HSDRG+ Y    +  R+ EA +  S+   G S DNA  E
Sbjct: 176 VLDALEQALHTRRPEPHRLVHHSDRGSQYLSIRYSERLGEAGIEPSVGNTGDSYDNALAE 235

Query: 453 GFFGRLKTELFYPR-DWKAITIEQFVAEVDAYIRWYNEKRIKISLGSLSPVEY 504
              G  KTEL + R  WK  +++    E   ++ W+N +R+   +G+  P E+
Sbjct: 236 TINGLYKTELIHKRGPWK--SVDSLEWETLKWVTWFNHQRLLEPIGNRPPAEF 286