Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 90/328 (27%), Positives = 135/328 (41%), Gaps = 24/328 (7%)

Query: 11  FPELKELLLSEIGAIEIG--GITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAV-A 67
           F EL + L + + + +    G++ DSR   PG LFVA+ G + DG  Y+ +  AKGAV A
Sbjct: 7   FSELTQALSARVLSSDCSFDGVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGA 66

Query: 68  VVSGHAVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVASFVRQIWAF 127
           +V     ++ +P L+V D RL L    +       + + A+TG++GKT+V   +  +   
Sbjct: 67  LVQRAVADSTLPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGVLRT 126

Query: 128 AGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAME--ASSHGLDQ 185
            G   A  G          D+GA     P+T    L ELA E  T A +E  AS  G   
Sbjct: 127 RGPVHATRGNL------NNDFGA-----PLT----LLELAPEH-TAAVIELGASRVGEIA 170

Query: 186 RRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKA 245
             +           N G  H+      E  + AK  + + L   G   +   D  +    
Sbjct: 171 YTVALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWR 230

Query: 246 IGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANAL 305
           + AA    L    +     +         R      +H       V + L G+  VANAL
Sbjct: 231 VRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANAL 290

Query: 306 VAAGLAMSTGVP---AATALKALEKLVG 330
            AA  A + GV     AT L A++ + G
Sbjct: 291 AAAAAAYALGVSLFGIATGLGAVQPVKG 318