Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 495 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Pectobacterium carotovorum WPP14

 Score =  278 bits (711), Expect = 3e-79
 Identities = 180/470 (38%), Positives = 252/470 (53%), Gaps = 21/470 (4%)

Query: 30  ITADSRKAAPGSLFVAVAGTKADGAAYVKDAVAKGAVAVVSGHAVEA---------DVPV 80
           +T DSR AA G LFVA+ G KADG  Y+  A+A+G  A+V+    EA          VPV
Sbjct: 25  MTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGVAAIVAEAEGEAADGTVREMHGVPV 84

Query: 81  LVVTDPRLYLSLAASRFYGKQPDTM--VAVTGTAGKTSVASFVRQIWAFAGHAAAQIGTT 138
           + +++    LS  A RFY +  + +  + VTGT GKT+    + Q     G  +A +GT 
Sbjct: 85  VYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 144

Query: 139 GVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVHLSAAGF 198
           G    GR      TT   V +  +L++L  +G T AAME SSHGL Q R+  +  +AA F
Sbjct: 145 GNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFAAMEVSSHGLVQHRVAALPFAAAVF 204

Query: 199 TNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDP----WSDKAIGAAREAGL 254
           TNL RDH+DYH  +E Y AAK  LF     +    +I ADD     W  +   A      
Sbjct: 205 TNLSRDHLDYHGDMESYEAAKWALFGE--HRVGQMIINADDEVGLRWLAQLPDAVAVTME 262

Query: 255 EVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVANALVAAGLAMST 314
                G  G++L   ++++  +   I         E++  L G F V+N L+A    +S 
Sbjct: 263 NNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIESRLMGAFNVSNMLLALATLLSL 322

Query: 315 GVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDALENVLTSVRPFTSGRII 374
           G P    + A  +L    GR+E V Q +      VDYAH PDALE  L + R    G++ 
Sbjct: 323 GYPLDKLVIAGSQLQPVCGRME-VFQAEGKPTVVVDYAHTPDALEKALEAARLHCQGKLW 381

Query: 375 TVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEVMAAA--AGALE-I 431
            VFGCGGDRDKGKRP+MG +A +L+D V+VTDDNPRSE+   I +++++    AG ++ I
Sbjct: 382 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGRVQVI 441

Query: 432 GDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGSVTLPFSDHEQVRSAL 481
             RAEA+  A+      D ++VAGKGHE+ Q+VG+  L +SD   V   L
Sbjct: 442 HGRAEAVTSAIMQAQENDVVLVAGKGHEDYQLVGNQRLDYSDRITVARLL 491