Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 495 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (NCBI) from Escherichia coli BW25113

 Score =  275 bits (704), Expect = 2e-78
 Identities = 186/498 (37%), Positives = 252/498 (50%), Gaps = 29/498 (5%)

Query: 2   NLRDISGNAFPELKELLLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKDAV 61
           NLRD+     P+     L E+        T DSR AA G LFVAV G +ADG  Y+  A+
Sbjct: 5   NLRDLLAPWVPDAPSRALREM--------TLDSRVAAAGDLFVAVVGHQADGRRYIPQAI 56

Query: 62  AKGAVAVVSGHAVEAD---------VPVLVVTDPRLYLSLAASRFYGKQPDTM--VAVTG 110
           A+G  A+++    EA          VPV+ ++     LS  A RFY +  D +  V VTG
Sbjct: 57  AQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTG 116

Query: 111 TAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEG 170
           T GKT+    + Q     G  +A +GT G    G+      TT   V +   LA L  +G
Sbjct: 117 TNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQG 176

Query: 171 VTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKG 230
            T  AME SSHGL Q R+  +  +A+ FTNL RDH+DYH  +E Y AAK  L+       
Sbjct: 177 ATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHC 234

Query: 231 APAVIFADDP----WSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDG 286
             A+I ADD     W  K   A   +  +      +G++L    V +      I      
Sbjct: 235 GQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSW 294

Query: 287 VIFEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGAL 346
              E++  L G F V+N L+A    ++ G P A  LK   +L    GR+E V        
Sbjct: 295 GDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRME-VFTAPGKPT 353

Query: 347 AYVDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTD 406
             VDYAH PDALE  L + R   +G++  VFGCGGDRDKGKRP+MG +A   +D+ +VTD
Sbjct: 354 VVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTD 413

Query: 407 DNPRSEDAATIRSEVMAA---AAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQI 463
           DNPR+E+   I ++++A    A  A  +  RAEA+  AV      D ++VAGKGHE+ QI
Sbjct: 414 DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQI 473

Query: 464 VGSVTLPFSDHEQVRSAL 481
           VG+  L +SD   V   L
Sbjct: 474 VGNQRLDYSDRVTVARLL 491