Pairwise Alignments

Query, 477 a.a., UDP-MurNAc-pentapeptide synthetase from Agrobacterium fabrum C58

Subject, 452 a.a., UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase (NCBI) from Escherichia coli BW25113

 Score =  220 bits (560), Expect = 9e-62
 Identities = 150/440 (34%), Positives = 220/440 (50%), Gaps = 19/440 (4%)

Query: 26  ITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEAKLPALGRLTVPMI 85
           +  ++ D+R +  G  F A+KG+R D HD+   A A GA  L+V+         + +P +
Sbjct: 24  LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----DIDLPQL 78

Query: 86  VVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVHAAVASFNNH 145
           +V+D   A G+LA   R++  AR++A+TGS GKT+ KEM    L+  G       + NN 
Sbjct: 79  IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNND 138

Query: 146 WGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEI 205
            GVP+TL R+  + ++ V E+G NH GEI   V + RP  A++  +A AHL  F ++  +
Sbjct: 139 IGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGV 198

Query: 206 AAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQEAGIEHILTFGQH-AKADFRLADFES 264
           A AK EIF G+ E G  I+N DN  +   +      G   +  F  + A +DF   +   
Sbjct: 199 AKAKGEIFSGLPENGIAIMNADNNDWLNWQSV---IGSRKVWRFSPNAANSDFTATNIHV 255

Query: 265 TTTGSTIWAILNGETSELHINIPGRHIADNAMAVLGAVAVTGANLDRALEALGTLEAVKG 324
           T+ G+         + ++ + +PGRH   NA+A        GA LD     L  L+AV G
Sbjct: 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPG 315

Query: 325 RGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFS 384
           R     L  N    LL+D+SYNAN  SM AA+ VLAE      G RV V+GDM E+G  S
Sbjct: 316 RLFPIQLAENQ---LLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAES 368

Query: 385 AQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPDSVTVIWFPTTAELTDFALQWV-QPG 443
              H ++     AAGI+ V   G+   A+  A    V   +   TA +T   L    Q  
Sbjct: 369 EACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--SGVGEHFADKTALITRLKLLIAEQQV 426

Query: 444 DALMVKSSLGLGFGKIVAAL 463
             ++VK S      ++V AL
Sbjct: 427 ITILVKGSRSAAMEEVVRAL 446