Pairwise Alignments

Query, 724 a.a., DNA ligase from Agrobacterium fabrum C58

Subject, 785 a.a., NAD-dependent DNA ligase LigA from Pseudomonas simiae WCS417

 Score =  458 bits (1179), Expect = e-133
 Identities = 280/701 (39%), Positives = 384/701 (54%), Gaps = 78/701 (11%)

Query: 16  ASSELAFLAAELARHDALYHGKDAPEISDADYDALKRRNDAIEAAFPALVRADSPSKKVG 75
           A + +  L AEL +H+  YH  D P I DA+YD L     A+EA  P LV  DSP+++VG
Sbjct: 4   AHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVG 63

Query: 76  FTPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD------SIAFTAEPK 129
              L  F  + H  PMLSL N F E  + +F   V   L     D      ++ ++ EPK
Sbjct: 64  SAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAAVEYSCEPK 123

Query: 130 IDGLSMSIRYENRKLKTAATRGDGTTGENVTANIRTIKEIPNELPADA-PDVVEVRGEVY 188
           +DGL++S+ Y++ +L   ATRGDGTTGE+++ N+RT++ IP +L     P  +EVRGEV+
Sbjct: 124 LDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPANLEVRGEVF 183

Query: 189 MAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYALGEVSNGGQ 248
           M+K+ F  LNA     G +T+ NPRN A+GSLRQLD+ +TA R L F  Y        G 
Sbjct: 184 MSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCY--------GV 235

Query: 249 PARIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYDIDGVVYKV 308
              I+DT  G +++ ++WG P++  +K     Q  LE+Y +IG  R  L Y+IDGVV+KV
Sbjct: 236 TTDISDTHIGNLQQLQKWGMPISRELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVFKV 295

Query: 309 DRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARLTPITVGGV 368
           + +  Q  LGFR+R PRWA AHKFPA +  T + ++E QVGRTGA+TPVARL P+ V GV
Sbjct: 296 NSIASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGV 355

Query: 369 VVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVLLEKRAAGA 428
            V+NATLHN D +  +G            + IGDTVI++RAGDVIPQV+ V+LE+R   A
Sbjct: 356 TVSNATLHNMDEVARLG------------VMIGDTVIIRRAGDVIPQVVSVVLERRPENA 403

Query: 429 AKYVFPEKCPVCGSH------AVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVSRN 482
                P+ CPVCGSH        R + ++T    +V RC G   C AQ  + + HFVSR 
Sbjct: 404 RAVPIPQSCPVCGSHVERTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRR 463

Query: 483 AFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVKKL 542
           A DI+GLG K I+   +       I +  D++ LK      H+  LE   GF  +S KKL
Sbjct: 464 AMDIDGLGDKTIEQLVDEK----LIGSPADLYKLK----YEHIIDLE---GFADISSKKL 512

Query: 543 FDAIDARRAIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAEL 602
             AI+  ++  L R I+ALGI  VGE TAK+LARS  + E  +KA+             L
Sbjct: 513 ITAIENSKSPTLARFIYALGIPDVGEETAKVLARSLASLERVQKALPEV----------L 562

Query: 603 NSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELQPKEAEKPSTEGSPVAGKTVVFTGSL 662
             +  +G  VA  I  F+++  N DVI  L   L P+E                      
Sbjct: 563 TYLPDVGLEVAHEIHSFFEDSHNQDVIGAL---LSPEECGLQ------------------ 601

Query: 663 EKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLA 703
               +D+    AE   +   G +  K  +   GPGA  KLA
Sbjct: 602 ---LQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLA 639



 Score =  103 bits (256), Expect = 4e-26
 Identities = 69/170 (40%), Positives = 97/170 (57%), Gaps = 16/170 (9%)

Query: 557 LIFALGIRHVGETTAKLLARSYGTYEHFEKAMKAAADPASDAWAELNSIDGIGEVVARAI 616
           L+  L +  VG   A+ LA  + T E   KA           W ++     + E  A+A+
Sbjct: 621 LLDKLHVPSVGPGAAQKLADKFVTLEGVIKA----------DWLDMRQ--ALPEKQAKAV 668

Query: 617 IEFYKEPRNLD---VIDRLIRELQPK-EAEKPSTEGSPVAGKTVVFTGSLEKFTRDEAKA 672
            EF+    N      I++ +++     ++EK   EG P AG T V TGSLE  +RD AK 
Sbjct: 669 REFFDNADNAHRALAIEQQLKDFGMHWDSEKKVVEGLPEAGHTWVLTGSLELMSRDVAKE 728

Query: 673 RAESLGAKVAGSVSKKTDILVAGPGAGSKLAKATELGVQTMDEDEWLALI 722
           + ESLGAKVAGSVS KT  +VAGPGAGSKL KA+ELG++ +DE+ ++A +
Sbjct: 729 KLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKASELGLKVLDEEAFVAFL 778