Pairwise Alignments

Query, 383 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  101 bits (252), Expect = 3e-26
 Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 10/309 (3%)

Query: 67  ATLVVTAPAKKGIVNDRLNAIGNGQAIQSVVVMPQVSGTLSEIRAAAGARVVKGQVLARL 126
           AT V  A A++  +  +  A G  +A+  V V  ++ G ++ I   +G  V  GQ+L +L
Sbjct: 38  ATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQL 97

Query: 127 DDEEQVIERDKAQVALRSA---IEKSSSYKNLKSFSRLDVMDAQIAEEAAKLALSTAELN 183
           +D  +   R + Q  LR+A   +++S   + + + S+  + +A  A + A+  L   E  
Sbjct: 98  NDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEAL 157

Query: 184 LKRRDIVAPIEGVAGIVAANVGDNVTTQSTIVSIDDRSEILVNFWAPERFATAIKVGMPV 243
           + ++ I AP  G  GI   + G  +    TIVS+ D S++ VNF   E+ A  +  G  +
Sbjct: 158 IAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQVL 217

Query: 244 EATSISRPGETFTGEIEAVDNRVDEASRTIRIRAKFGNEKDELRAGMSFGVTMRFA-GET 302
             T  +  G+ F   + AVD  V  A R ++++A   N + +L+ GM  GV +  A   T
Sbjct: 218 ALTVDAVRGQDFQARVVAVDPVVSTA-RLVQVQAALPNPQGQLQPGMYAGVRLDAAQPST 276

Query: 303 YASVDPLAVQWDAEGSYVWRVTDNKSNKVRVQIVQ-----RNPDAVLVKAELAEGEPVVI 357
             +V   A+ + A G  V+  T +  +  RV  VQ     R    V + + L  G+ VV+
Sbjct: 277 VLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVV 336

Query: 358 EGLQRVREG 366
            G  ++ +G
Sbjct: 337 SGQLKLSDG 345