Pairwise Alignments

Query, 178 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 191 a.a., RNA polymerase sigma E factor from Escherichia coli BL21

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 40  DGEDLLQDCVEKALANKRQWRG-TGLKTWAYTIMTNLYRNRHRAE-KRHPSESLDGHET- 96
           D  D++Q+   KA      +RG +   TW Y I  N  +N   A+ +R PS  +D  E  
Sbjct: 45  DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAE 104

Query: 97  ----------IAIPDTLSDTLENDRL-HRALALLSPDMRAVLMLVTVEGYSYQEAAETLA 145
                     I+ P+ L  + E  ++  R +  L  D+R  + L  ++G SY+E A  + 
Sbjct: 105 NFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMD 164

Query: 146 IPLGTVMSRLSRARETL 162
            P+GTV SR+ RARE +
Sbjct: 165 CPVGTVRSRIFRAREAI 181