Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 68.9 bits (167), Expect = 2e-15
 Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 35/295 (11%)

Query: 208 GSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAY 267
           G+  +  +A+   A +R  ++L  +   A +L  E   F PD  V +F  + +    + +
Sbjct: 23  GAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDW-ETLPYDLF 81

Query: 268 VPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQM 327
            P  D   ++ +S+  ++  + H            ++V   + ++ +   +     +  +
Sbjct: 82  SPHQDIISQRIASLY-RLPELAHGV----------LVVPITTALHRLAPTKFLLGSSLVL 130

Query: 328 QVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEI 387
            +G +LD  Q+   L A  Y+  D  ++ G F VRG  I++FP       +RI +F DEI
Sbjct: 131 DIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRIDLFDDEI 189

Query: 388 DSITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLL 447
           +++  FDP   +    + SVK+     +    P    A+   K              R  
Sbjct: 190 ETLRTFDPENQRSIDKVDSVKLLPAREF----PLQKDAVTRFK-------------ARFR 232

Query: 448 EAQRLEQRTRYDIEMLEATGSCAGIENYSRYLTGRNPGEPPPTLFEYIPDNALLF 502
           E   ++ R     + L +  + AGIE Y          +   TLF+Y+P +  +F
Sbjct: 233 ERFDVDFRRCPIFQDLSSGITPAGIEYYLPLFF-----DETSTLFDYLPQDTQVF 282



 Score = 37.0 bits (84), Expect = 8e-06
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 622 KRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPEC 681
           ++ A DL E + E   R+   H  +   E  +++ D     F+VL+   ++  G+D+P  
Sbjct: 825 EKCAADLAELVPE--ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSA 882

Query: 682 GFVAILDADKEGFLRSETSLIQTIGRAARN 711
             + I  ADK G       L Q  GR  R+
Sbjct: 883 NTIIIERADKFGL----AQLHQLRGRVGRS 908