Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 13/190 (6%)

Query: 220 EATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKES 279
           +A  R   +   +   A +L  E   F P+     F        P+      D+F   + 
Sbjct: 34  KAAGRATAMFTADANDAQRLIDEIAFFAPELRCALF--------PDWETLPYDSFSPHQD 85

Query: 280 SINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLL 339
            I+E++  +   + +      D ++V + + +Y +         TF  +   +L++ +L 
Sbjct: 86  LISERLATLWRISQKEA----DVVLVPATTALYRLAPPAFLAGYTFHFKAKQKLEESKLK 141

Query: 340 ADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQ 399
           A L    Y         G + VRG  I++FP       +R+ +F DEIDSI  FDP T +
Sbjct: 142 AQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMG-SPVPFRVDLFDDEIDSIRTFDPDTQR 200

Query: 400 KTGDLQSVKI 409
               +  V++
Sbjct: 201 SLYPVPEVRL 210



 Score = 32.0 bits (71), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 626 EDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVA 685
           + L E L E   R+   H  +   E   ++RD     +++L+   ++  G+D+P    + 
Sbjct: 835 QKLEEILPE--ARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIV 892

Query: 686 ILDADKEGFLRSETSLIQTIGRAARN 711
           +  ADK G       L Q  GR  R+
Sbjct: 893 MSRADKFGL----AQLHQLRGRVGRS 914