Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 60.1 bits (144), Expect = 9e-13
 Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 13/202 (6%)

Query: 208 GSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAY 267
           G+  +  +A+   +  R  ++L  +   A +L  E + F PD  V  F  + +    + +
Sbjct: 23  GAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDW-ETLPYDLF 81

Query: 268 VPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQM 327
            P  D   ++ +S+  ++  + H            ++V   + ++ +         +  +
Sbjct: 82  SPHQDIISQRIASLY-RLPELSHGI----------LVVPITTALHRLAPTRFLLGSSLVL 130

Query: 328 QVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEI 387
            VG  +D  Q+   L A  Y+  D  ++ G F VRG  I++FP       +RI +F +EI
Sbjct: 131 DVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMG-SKLPYRIDLFDNEI 189

Query: 388 DSITEFDPLTGQKTGDLQSVKI 409
           +++  FDP T +    + SV++
Sbjct: 190 ETLRTFDPETQRSIDKVDSVRL 211



 Score = 38.1 bits (87), Expect = 3e-06
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 33/131 (25%)

Query: 635 QGVRVRYMHSDIDTLERI-----EIIRDLRLGA---------------------FDVLVG 668
           +G +V Y+H+D+ T+E+      E++ + R+G                      F+VLV 
Sbjct: 810 RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVA 869

Query: 669 INLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNITGSMK 728
             ++  G+D+P    + I  ADK G       L Q  GR  R+       YA  +T + +
Sbjct: 870 STIIETGIDVPSANTIVIERADKFGL----AQLHQLRGRVGRSHHQ---AYAYLLTPTRQ 922

Query: 729 RAMEETSRRRE 739
           +   +  +R E
Sbjct: 923 KVSADAEKRLE 933



 Score = 26.9 bits (58), Expect = 0.008
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 177 YQPAGDQPTAI-ADLVEGINSGERSQVLLGVTGSGKT---FTMAKVIEATQRPAVILAPN 232
           ++   DQ  AI A   + +      +++ G  G GKT      A +   + R   +L P 
Sbjct: 601 FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT 660

Query: 233 KTLAAQLYSEFKNFFPD 249
             LA Q Y+ F++ F D
Sbjct: 661 TLLAQQHYNSFRDRFAD 677