Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

 Score = 60.5 bits (145), Expect = 7e-13
 Identities = 68/304 (22%), Positives = 122/304 (40%), Gaps = 40/304 (13%)

Query: 201 QVLLG-VTGSGKTFTMAKVIEATQRPAVILAPNKTLAAQLYSEFKNFFPDNAVEYFVSYY 259
           Q LLG +TG+      A+++E      V++ P+   A +L  E + F             
Sbjct: 16  QRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTA----------- 64

Query: 260 DYYQPEAYVPRSDTFIEKESSINEQIDRMRHSATRSLLERDDCIIVASVSCIYGIGSVET 319
              QP   +P  +T      S +++I   R S    L      +++  V+ +        
Sbjct: 65  ---QPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHA 121

Query: 320 YT-AMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAW 378
           +       ++ G RL + +L   L    Y+  D   + G F  RG  +++FP   E+  +
Sbjct: 122 FLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEP-F 180

Query: 379 RISMFGDEIDSITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLA 438
           RI  F DEIDS+  FD  T +   +++ + +     + T +  +       +E+ +VR  
Sbjct: 181 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVR-- 238

Query: 439 ELEKAGRLLEAQRLEQRTRYDIEMLEATGSC-AGIENYSRYLTGRNPGEPPPTLFEYIPD 497
                    +A+ + Q+         + G+  AGIE +          +P P LF Y+P 
Sbjct: 239 --------RDAEHVYQQV--------SKGTLPAGIEYWQSLFF----NQPLPALFSYLPT 278

Query: 498 NALL 501
             LL
Sbjct: 279 GTLL 282



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 622 KRMAEDLTEYLHEQGVRVRYMHSDIDTLERIEIIRDLRLGAFDVLVGINLLREGLDIPEC 681
           ++ A+ L E + E  + + +       LER+  + D     F+VLV   ++  G+DIP  
Sbjct: 823 EKAAQQLNELVPEARIAIGHGQMRERDLERV--MNDFHHQRFNVLVCTTIIETGIDIPSA 880

Query: 682 GFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNITGSMKRAMEETSRRRE 739
             + I  AD  G       L Q  GR  R+       YA  +T + K    +  +R E
Sbjct: 881 NTIIIERADHFGL----AQLHQLRGRVGRSHHQ---AYAYLLTPNPKAMSNDAHKRLE 931