Pairwise Alignments

Query, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

Subject, 1149 a.a., transcription-repair coupling factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 58.9 bits (141), Expect = 2e-12
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 44/194 (22%)

Query: 321 TAMTFQMQVGDRLDQRQLLADLVAQQYKRRDMDFQRGSFRVRGDTIEIFPAHLEDAAWRI 380
           T   F+ +VG  LD + L     A  Y R     +RG F VRG  ++++P   E+   R+
Sbjct: 123 TQAGFETKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEPV-RL 181

Query: 381 SMFGDEIDSITEFDPLTGQKTGDLQSVKIYANSHYVTPRPTLNGAIKSIKEELKVRLAEL 440
            MFG E++SI  FDP T + TG +  V                             LA +
Sbjct: 182 DMFGSELESIRTFDPETQRSTGQMTFVS----------------------------LAPV 213

Query: 441 EKAGRLLEAQRLEQRTRYDIEMLEATGSCAGIENYSRYLTG-RNPG---------EPPPT 490
            +A  LL+A  +   +R+    L   G+      Y+    G R  G         E   +
Sbjct: 214 SEA--LLDAAAI---SRFRTGYLNLFGAPGDDPLYATISEGARRQGMEQWLPLFYETLDS 268

Query: 491 LFEYIPDNALLFID 504
           LF+Y+PD+A +F+D
Sbjct: 269 LFDYLPDDAAIFLD 282



 Score = 41.2 bits (95), Expect = 4e-07
 Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 26/194 (13%)

Query: 554 LTVAVSATPGSWEMEQSGGVFAEQVIRPTGLI-DPPVEVRSARSQV---DDVLGEIRETA 609
           LT+  +  P + +M  SG       IR   +I  PPV+  + R+ V   D VL  +RE  
Sbjct: 754 LTLTATPIPRTLQMALSG-------IREMSIIATPPVDRLAVRTYVTPWDPVL--VREAL 804

Query: 610 AKG-YRTLCTVLTKRMAEDLT---EYLHEQGVRVRYM--HSDIDTLERIEIIRDLRLGAF 663
            +  YR           +DL    ++L EQ   V+++  H  +   +  E++     G +
Sbjct: 805 LREKYRGGQAYYVAPRLKDLPAIEKFLREQVPEVKFVVGHGQMSATQLEEVMSAFYDGEY 864

Query: 664 DVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNVDGKVILYADNI 723
           DVLV   ++  GLDIP    + +  AD  G       L Q  GR  R+   K   +A   
Sbjct: 865 DVLVSTTIVESGLDIPTANTLIVHRADMFGL----AQLYQIRGRVGRS---KARAFAYLT 917

Query: 724 TGSMKRAMEETSRR 737
           T ++K       RR
Sbjct: 918 TDAVKPMTLSAERR 931