Pairwise Alignments

Query, 736 a.a., bacteriophytochrome protein from Agrobacterium fabrum C58

Subject, 548 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  151 bits (381), Expect = 1e-40
 Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 4/240 (1%)

Query: 494 EEMADLTRELQRTNKELEAFSYSVSHDLRAPFRHIVGFAQLLRER-SDALDEKSLHYLQM 552
           +++A    EL+R+N ELE F+Y  SHDLR P R I  +  LL  R +  L+   L +L  
Sbjct: 307 QKVATYLAELERSNAELEQFAYVASHDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAF 366

Query: 553 ISEAALGAGRLVDDLLNFSQLGRTQLTLKPVDMQKVVSEVRRSLSHAVSDR--QIEWRIG 610
             + A    RLV DLL+FS++ R    +  +D   ++ +  R L+ A+ +    +E   G
Sbjct: 367 ARDGAQRMDRLVLDLLDFSRIQRKGSPIVAMDADPLLHQALRHLAPAIEESGGAVEVAEG 426

Query: 611 ALPV-IFGDPTLLRQVWYNLIENAIKYSSREPVSIITISAVETEDDVTYSVEDNGVGFDM 669
              V + GDP  + +++ NLI NA+KY + +   ++ +S   T  +    V DNG+G D 
Sbjct: 427 GEAVRVMGDPDQVIRLFQNLIGNAVKYRAPDRAPLVKVSWQRTGGEWECVVADNGIGIDP 486

Query: 670 AYYNKLFGVFQRLQRVEDFEGTGIGLALVRRIVERHHGLVGAEGTVGEGATFSFTLPVTK 729
            Y+ ++FG+FQRL   + + GTGIGLA+ ++IVERH G +  E    +G+ F FTLP  +
Sbjct: 487 QYFERIFGIFQRLHTPDAYAGTGIGLAICKKIVERHGGRIWVESVPDQGSVFHFTLPAAQ 546