Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 96.3 bits (238), Expect = 3e-25
 Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 16/168 (9%)

Query: 16  GDRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTFAVSAGKPATWL 75
           GD+ A   LY+  S  L  + ++I R+R+ AE+ + + +IK+W+ A +F  S G    W+
Sbjct: 14  GDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSRGSARGWV 73

Query: 76  ATIARNHAIDTIRARK---PASDDIDE--AYDLVDESIRDPEQQVVLVDEGRRIDDCMRE 130
            ++ R+ A++ +R +    P SD+ ++  A D  + + R  +           +  C+ +
Sbjct: 74  FSVTRHLALNFVRNQYREVPLSDEHEQVAATDTFEFTARSGQ-----------VHTCLEQ 122

Query: 131 LETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLRECM 178
           L+ V    +  AYV+G S+ E++ +L  PL TV+ W++RSL  LRECM
Sbjct: 123 LDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170