Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 177 a.a., Sigma-K factor from Alteromonas macleodii MIT1002

 Score =  114 bits (286), Expect = 7e-31
 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 7/180 (3%)

Query: 1   MQGTEIATLINRVGMGDRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQR 60
           M+   +  L+ +   GD+ AF  LY+ TSP+L+A+ L++L+    A+EA Q+ YIK+W  
Sbjct: 1   MEHETLFPLLCKTADGDKKAFAELYKITSPQLYAVALRLLKRPELADEATQDAYIKIWHN 60

Query: 61  ARTFAVSAGKPATWLATIARNHAIDTIRARKPASDDIDEAYDLVDE--SIRDPEQQVVLV 118
           A  +    G   TW+ +IAR  A+D IR       ++    +L D+  S  +  Q + L 
Sbjct: 61  AGNYQRGKGTVLTWMVSIARYRALDLIRYH-----NVRNEVELNDDAPSGMETTQSIKLE 115

Query: 119 DEGRRIDDCMRELETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLRECM 178
            E  ++  C+ EL+    QA+  AYV G+S+ E+   L  PL T+++W+RR L  L+ C+
Sbjct: 116 AEQAKLASCLDELDGPQRQAIHLAYVNGMSHQEVVTHLASPLGTIKSWIRRGLQSLQRCL 175