Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 203 a.a., Sigma-W factor from Alteromonas macleodii MIT1002

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 18  RSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTFAVSAGKPATWLAT 77
           + +F  ++   +P+L +  LK + +   A E +Q+    VWQ+A  F    G P+TW+ T
Sbjct: 36  KRSFARVFNYFAPRLRSYALKQMGNEALAMELVQDTMSNVWQKAHLFNAEKGSPSTWIFT 95

Query: 78  IARNHAIDTIRARKPASDDI--DEAYDLVDESIRDP-----EQQVVLVDEGRRIDDCMRE 130
           IARN   D +R  +   +D+  D+ + ++ E   D      ++QV L     +I      
Sbjct: 96  IARNIRFDMLRKLRNRKEDVCSDDLWPVLCEQTADANEAPLDEQVTL----EQIGHLFES 151

Query: 131 LETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLR 175
           L       V   Y++G S  E+SDEL +PL TV++  R +L +L+
Sbjct: 152 LPVKQKAVVEAIYIDGKSQQEVSDELSIPLGTVKSRTRLALQRLK 196