Pairwise Alignments

Query, 180 a.a., sigma factor from Agrobacterium fabrum C58

Subject, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 72.4 bits (176), Expect = 4e-18
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 6/171 (3%)

Query: 7   ATLINRVGMGDRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTFAV 66
           A L+  V  GD  A  +L +A  P++ A+  ++L D  EAE+  QE ++++W+ A T+  
Sbjct: 7   AKLVADVAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKHAGTWRQ 66

Query: 67  SAGKPATWLATIARNHAIDTIRARKPASDDIDEAYDLVDESIRDPEQQVVLVDEGRRIDD 126
            A +  TW+  +A N   D +R R+  S  + +  DL D +    E     +DEG  +  
Sbjct: 67  GAARFDTWIHRVALNLCYDRLRKRREIS--VAQPSDLAD-ARTSSENGGADIDEGEAVGR 123

Query: 127 CMRELETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWL---RRSLLKL 174
            +  +     +A+   Y + +S  E +D + V ++ + + L   RR+L K+
Sbjct: 124 ALSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRRALQKI 174