Pairwise Alignments

Query, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas putida KT2440

 Score = 1626 bits (4210), Expect = 0.0
 Identities = 817/1359 (60%), Positives = 1040/1359 (76%), Gaps = 10/1359 (0%)

Query: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFKSVFPI 65
            S+  ++R+RK F K+P+V ++P L+ +Q  SY +FL     K    D GL+A FKSVFPI
Sbjct: 4    SYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSVFPI 63

Query: 66   TDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125
              +SG + LE+V Y    P FDV+EC  R +T+A PL+V +RLI+FD  +++  K+IKDI
Sbjct: 64   ISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFD--KESSNKAIKDI 121

Query: 126  KEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185
            KEQ VYMG++PLMT NGTF++NGTERVIVSQ+HRSPGVFFDHD+GK+HSSGKLL++AR+I
Sbjct: 122  KEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARII 181

Query: 186  PYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYERSGDGW 245
            PYRGSWLD EFD KD V+ RIDRRRKLP + LL ALG   EE+L+TFYT   +  SG+  
Sbjct: 182  PYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEKL 241

Query: 246  RIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDEDLYGN 305
             +   P+ L+    + D+ D +TG+V+VE G+++T R I QL   G+K L    E + G 
Sbjct: 242  SLELVPQRLRGEVAVMDIHD-ETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR 300

Query: 306  YLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNTLSADK 365
              A+ IV+ +TGEI  E   E+  + L  + ++    I  L  + ++ G +I +TL  D 
Sbjct: 301  TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT 360

Query: 366  NQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLDLDAED 425
              N+ EAL +IYR+MRPGEPPT D+AE +FN+LFF AERYDLSAVGR+K N R+     +
Sbjct: 361  TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE 420

Query: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485
                L KEDI+ V+K LV++R+GKG +DDID+LGNRRVR VGE+ ENQ+R+GL+R+ERA+
Sbjct: 421  GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480

Query: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545
            KER+S  E + +MPQDLINAKP AAAV+EFFGSSQLSQFMDQ NPLSEITHKRR+SALGP
Sbjct: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540

Query: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKII 605
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +AR N+YGF+ESPYR + 
Sbjct: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600

Query: 606  DGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNINLMDV 665
            +G V+ D+++LSA+EEA + +AQA+A ++ +    +E V  RH  E  +   +++ LMDV
Sbjct: 601  EGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAPEDVTLMDV 660

Query: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVARDSGAA 725
            SPKQ+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP LRA+ P VGTGME  VARDSG  
Sbjct: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720

Query: 726  IAARRGGVVDQVDATRIVIRATED-LDAGKSGVDIYRLQKFQRSNQNTCVNQRPLVSVGD 784
            + ARRGGV+D VDA+RIV+R  +D ++ G++GVDIY L K+ RSNQNTC+NQRPLVS GD
Sbjct: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780

Query: 785  AISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEE 844
             + +GDI+ADGPSTD+G+LALG+N  +AFM WNG+N+EDSI +SER+V +D FT+IHI+E
Sbjct: 781  KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840

Query: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904
               +ARDTKLGPEEIT DIPNV E AL  LDEAGIVY+GAEV  GDILVGK+TPKGE+ +
Sbjct: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900

Query: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIEREEIER 964
            TPEEKLLRAIFGEKASDV+DTS+R+P GT GT+++V+VF R GVE+D RA+AIE+ +++ 
Sbjct: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE 960

Query: 965  LAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWWMFAV 1024
            + KD ++E  I++   + RL   L G V + G  G KKG  +++ V+      QW+   +
Sbjct: 961  IRKDLNEEFRIVEGATFERLRSALNGQV-VDGGAGLKKGTVITDEVLDGLEHGQWFKLRM 1019

Query: 1025 EDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084
             ++    +LE  +    + +  L+ +F DK  K+Q+GD++ PGV+K+VKV++A++R+IQP
Sbjct: 1020 AEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQP 1079

Query: 1085 GDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLAWACA 1144
            GDKMAGRHGNKGVVS I+PVEDMP   +GT VD+ LNPLGVPSRMNVGQILETHL  A  
Sbjct: 1080 GDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAK 1139

Query: 1145 GMGKKIGEMLEEYRKTMDISELRSELTEIY--ASEANDEVQRFDDDSLVKLAEEAKRGVS 1202
            G+G+KI  MLEE RK    +ELR  LTE+Y       + +  F D+ ++ LA   K+GV 
Sbjct: 1140 GLGEKIDRMLEEQRKA---AELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLKKGVP 1196

Query: 1203 IATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLVDD 1262
            +ATPVFDGA E ++ AMLK A L ESGQ VL+DGRTG  F+R VTVGYMYM+KLNHLVDD
Sbjct: 1197 MATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDD 1256

Query: 1263 KIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGR 1322
            K+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GR
Sbjct: 1257 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1316

Query: 1323 TKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELE 1361
            TK+Y+ IV GD   E G+PESFNVL+KE+RSLG+ ++LE
Sbjct: 1317 TKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355