Pairwise Alignments

Query, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Dickeya dianthicola ME23

 Score = 1583 bits (4100), Expect = 0.0
 Identities = 804/1362 (59%), Positives = 1033/1362 (75%), Gaps = 31/1362 (2%)

Query: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFKSVFPI 65
            S+  ++R+RK FGK P+V ++P L+ +Q  S+ +F+  D P+G     GL A F+SVFPI
Sbjct: 4    SYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD-PEG---QYGLEAAFRSVFPI 59

Query: 66   TDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125
              +SG S L++VSY    P FDV+EC+ R +T++APL+V LRL++++ +   G  ++KDI
Sbjct: 60   ASYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEG--TVKDI 117

Query: 126  KEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185
            KEQ VYMG++PLMT+NGTF++NGTERVIVSQ+HRSPGVFFD DKGK+HSSGK+L+ AR+I
Sbjct: 118  KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177

Query: 186  PYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYERSGDGW 245
            PYRGSWLD EFD KD ++ RIDRRRKLP T +L AL    EEIL  F+ K  YE   +  
Sbjct: 178  PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILDLFFDKVVYEIHNNKL 237

Query: 246  RIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDEDLYGN 305
            ++   PE L+      D I+AD G+V VE G+++T R IRQL   G++ ++   E + G 
Sbjct: 238  QMELVPERLRGETASFD-IEAD-GKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGK 295

Query: 306  YLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNTLSADK 365
             LA+D V+ STGE+   A  E+    L  + Q+G   +  L  + ++ G Y+  TL  D 
Sbjct: 296  VLAKDYVDESTGEVIAMANMELSLDLLAKLSQAGHKRLDTLFTNDLDHGPYMSETLRVDP 355

Query: 366  NQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLDLDAED 425
              +R  AL +IYR+MRPGEPPT ++AE +F +LFF  +RYDLSAVGR+K N  L  +  +
Sbjct: 356  TNDRLSALVEIYRMMRPGEPPTREAAETLFGNLFFSEDRYDLSAVGRMKFNRSLLREEIE 415

Query: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485
                L K DI+ V+K L+++R+GKGE+DDID+LGNRR+RSVGE+ ENQ+R+GL+R+ERA+
Sbjct: 416  GSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475

Query: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545
            KER+S  ++DT+MPQD+INAKP +AAV+EFFGSSQLSQFMDQ NPLSEITHKRR+SALGP
Sbjct: 476  KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535

Query: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKII 605
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +A+ N+YGF+E+PYR++ 
Sbjct: 536  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVR 595

Query: 606  DGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNINLMDV 665
            DG VT ++ YLSA+EE  Y +AQAN  LD EG F EE V CR  GE  L  RD ++ MDV
Sbjct: 596  DGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIEELVTCRSKGESSLFSRDQVDYMDV 655

Query: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVARDSGAA 725
            S +Q+VSV A+LIPFLE+DDANRALMG+NMQRQAVP LRA+ P VGTGME  VA DSG  
Sbjct: 656  STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715

Query: 726  IAARRGGVVDQVDATRIVIRATED-LDAGKSGVDIYRLQKFQRSNQNTCVNQRPLVSVGD 784
              A+RGG V  VDA+RIVI+  ED +  G++G+DIY L K+ RSNQNTC+NQ P VS+G+
Sbjct: 716  AVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775

Query: 785  AISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEE 844
             + +GD++ADGPSTDLG+LALG+N  VAFMPWNGYN+EDSIL+SER+V +D FT+IHI+E
Sbjct: 776  PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835

Query: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904
               ++RDTKLGPEEIT DIPNV E AL  LDE+GIVYIGAEV  GDILVGK+TPKGE+ +
Sbjct: 836  LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895

Query: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIEREEIER 964
            TPEEKLLRAIFGEKASDV+D+S+R+P G  GTI++V+VF R GVEKD+RA+ IE  ++++
Sbjct: 896  TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQ 955

Query: 965  LAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWWMFAV 1024
              KD  +E  IL+  ++ R+ D+L     +AG      GVE     + + PR +W    +
Sbjct: 956  AKKDLTEELQILEAGLFARIHDVL-----VAG------GVEADK--LDKLPRERWLELGL 1002

Query: 1025 EDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084
             DE+ Q++LE L  QYDE K   E++   K  K+ +GD++ PGV+K+VKV++AVKR+IQP
Sbjct: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQIQP 1062

Query: 1085 GDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLAWACA 1144
            GDKMAGRHGNKGV+S+I P+EDMP+ E+GT VDI LNPLGVPSRMN+GQILETHL  A  
Sbjct: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122

Query: 1145 GMGKKIGEMLEEYRKTMDISELRSELTEIYASEAND-----EVQRFDDDSLVKLAEEAKR 1199
            G+G KI  ML++ +   ++++LR  +   Y    ND     ++  F D+ +++LAE  K+
Sbjct: 1123 GIGDKINAMLKQQQ---EVAKLREFIQRAY-DLGNDVRQKVDLNTFSDEEVLRLAENLKK 1178

Query: 1200 GVSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHL 1259
            G+ IATPVFDGA E ++  +LK   L  SGQ  L+DGRTGE F+R VTVGYMYM+KLNHL
Sbjct: 1179 GMPIATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHL 1238

Query: 1260 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1319
            VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298

Query: 1320 AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELE 1361
             GRTK+Y+ IV GD   E G+PESFNVL+KE+RSLG+++ELE
Sbjct: 1299 NGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELE 1340