Pairwise Alignments

Query, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

Subject, 1378 a.a., DNA-directed RNA polymerase beta chain from Agrobacterium fabrum C58

 Score = 2711 bits (7028), Expect = 0.0
 Identities = 1378/1378 (100%), Positives = 1378/1378 (100%)

Query: 1    MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK 60
            MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
Sbjct: 1    MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK 60

Query: 61   SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120
            SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
Sbjct: 61   SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK 120

Query: 121  SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180
            SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
Sbjct: 121  SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF 180

Query: 181  AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER 240
            AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER
Sbjct: 181  AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER 240

Query: 241  SGDGWRIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE 300
            SGDGWRIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE
Sbjct: 241  SGDGWRIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE 300

Query: 301  DLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT 360
            DLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
Sbjct: 301  DLYGNYLAEDIVNYSTGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT 360

Query: 361  LSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD 420
            LSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
Sbjct: 361  LSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD 420

Query: 421  LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR 480
            LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
Sbjct: 421  LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR 480

Query: 481  MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL 540
            MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
Sbjct: 481  MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL 540

Query: 541  SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP 600
            SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
Sbjct: 541  SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP 600

Query: 601  YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI 660
            YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI
Sbjct: 601  YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI 660

Query: 661  NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR 720
            NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
Sbjct: 661  NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR 720

Query: 721  DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV 780
            DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
Sbjct: 721  DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV 780

Query: 781  SVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI 840
            SVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
Sbjct: 781  SVGDAISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI 840

Query: 841  HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG 900
            HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
Sbjct: 841  HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG 900

Query: 901  ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE 960
            ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE
Sbjct: 901  ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE 960

Query: 961  EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW 1020
            EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW
Sbjct: 961  EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW 1020

Query: 1021 MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR 1080
            MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
Sbjct: 1021 MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR 1080

Query: 1081 KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA 1140
            KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
Sbjct: 1081 KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA 1140

Query: 1141 WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG 1200
            WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG
Sbjct: 1141 WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG 1200

Query: 1201 VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV 1260
            VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
Sbjct: 1201 VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV 1260

Query: 1261 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA 1320
            DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
Sbjct: 1261 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA 1320

Query: 1321 GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQSEDQLPDAAE 1378
            GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQSEDQLPDAAE
Sbjct: 1321 GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQSEDQLPDAAE 1378