Pairwise Alignments

Query, 273 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 249 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 77.8 bits (190), Expect = 2e-19
 Identities = 77/277 (27%), Positives = 122/277 (44%), Gaps = 61/277 (22%)

Query: 18  GVVAGLLAGLFGIGGGAVLVPVFYHVFGLLDVPEAVRMHLSLGTSLAIIVPTSVRSFLTH 77
           G   G + GLFGIGGG + +PV   +FGL          L+ GT+L ++VP  + +   +
Sbjct: 11  GAALGTVGGLFGIGGGLIAIPVLGVLFGL-------DQQLAQGTALVMVVPNVMLALWRY 63

Query: 78  RQKGAVDIDLLKGWIVAVPLGTI------LASVVAAYASSVALRLIFAFIALALAFRMIV 131
            Q+  +++        A+PLG +      L S+ A    + A+R+ F    L L+   +V
Sbjct: 64  HQRNRIELR------HALPLGVMGFSFAWLGSIWAVGLDAGAMRIGFIAFLLTLSAYNLV 117

Query: 132 N------------RASWQLGSDLPKNPARFLVGTGIGLLSGLMGVGGGVMNNTFMT-LYG 178
                        R SW         P   ++G   G + GL GVGG V+    +T ++G
Sbjct: 118 RMFTRNAPPTAQMRYSW---------PWLGVLGAASGSMGGLFGVGGAVVATPVLTSVFG 168

Query: 179 RTIHQAVATSSGVGVLISLPG----LLGYIWAGWGNAGLPPFSTGFINWIAVVLLIPITL 234
            +  Q VA   G+ + ++LP     L+ Y W               ++W+  V L    L
Sbjct: 169 TS--QVVA--QGLSLALALPSTGVTLVTYAW------------HQEVDWMIGVPLAIGGL 212

Query: 235 LVAPYGVRLAHALSKKQLERAFGVFLVFVAAQFFYSV 271
           L   +GV++AHAL ++ L   F  FLV  A    + V
Sbjct: 213 LSISWGVKVAHALPERVLRGLFCGFLVVCAVMLTFKV 249



 Score = 49.3 bits (116), Expect = 8e-11
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 2   PPVSEILVFAAALAAAGVVAGLLAGLFGIGGGAVLVPVFYHVFGLLDVPEAVRMHLSLGT 61
           PP +++      L   G  +G + GLFG+GG  V  PV   VFG   V       ++ G 
Sbjct: 125 PPTAQMRYSWPWLGVLGAASGSMGGLFGVGGAVVATPVLTSVFGTSQV-------VAQGL 177

Query: 62  SLAIIVPTSVRSFLTHRQKGAVDIDLLKGWIVAVPL 97
           SLA+ +P++  + +T+     VD      W++ VPL
Sbjct: 178 SLALALPSTGVTLVTYAWHQEVD------WMIGVPL 207